Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02072 and H281DRAFT_02073 are separated by 200 nucleotides H281DRAFT_02073 and H281DRAFT_02074 are separated by 118 nucleotides H281DRAFT_02074 and H281DRAFT_02075 are separated by 391 nucleotides
H281DRAFT_02072: H281DRAFT_02072 - Protein of unknown function (DUF3108), at 194,363 to 195,637
_02072
H281DRAFT_02073: H281DRAFT_02073 - 3-oxoadipate enol-lactonase (EC 3.1.1.24), at 195,838 to 196,626
_02073
H281DRAFT_02074: H281DRAFT_02074 - Protein of unknown function (DUF3567), at 196,745 to 197,002
_02074
H281DRAFT_02075: H281DRAFT_02075 - methionine synthase (B12-dependent), at 197,394 to 198,464
_02075
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 194.870 kb on + strand, within H281DRAFT_02072 at 194.882 kb on + strand, within H281DRAFT_02072 at 194.883 kb on - strand, within H281DRAFT_02072 at 194.965 kb on - strand, within H281DRAFT_02072 at 194.987 kb on + strand, within H281DRAFT_02072 at 194.988 kb on - strand, within H281DRAFT_02072 at 194.988 kb on - strand, within H281DRAFT_02072 at 195.035 kb on + strand, within H281DRAFT_02072 at 195.035 kb on + strand, within H281DRAFT_02072 at 195.036 kb on - strand, within H281DRAFT_02072 at 195.036 kb on - strand, within H281DRAFT_02072 at 195.073 kb on + strand, within H281DRAFT_02072 at 195.074 kb on - strand, within H281DRAFT_02072 at 195.206 kb on + strand, within H281DRAFT_02072 at 195.206 kb on + strand, within H281DRAFT_02072 at 195.206 kb on + strand at 195.207 kb on - strand, within H281DRAFT_02072 at 195.207 kb on - strand, within H281DRAFT_02072 at 195.207 kb on - strand, within H281DRAFT_02072 at 195.277 kb on + strand, within H281DRAFT_02072 at 195.312 kb on - strand, within H281DRAFT_02072 at 195.375 kb on + strand, within H281DRAFT_02072 at 195.375 kb on + strand, within H281DRAFT_02072 at 195.375 kb on + strand, within H281DRAFT_02072 at 195.376 kb on - strand, within H281DRAFT_02072 at 195.499 kb on + strand, within H281DRAFT_02072 at 195.500 kb on - strand, within H281DRAFT_02072 at 195.500 kb on - strand, within H281DRAFT_02072 at 195.501 kb on + strand, within H281DRAFT_02072 at 195.501 kb on + strand, within H281DRAFT_02072 at 195.501 kb on + strand, within H281DRAFT_02072 at 195.501 kb on + strand at 195.502 kb on - strand, within H281DRAFT_02072 at 195.502 kb on - strand, within H281DRAFT_02072 at 195.502 kb on - strand, within H281DRAFT_02072 at 195.638 kb on + strand at 195.639 kb on - strand at 195.683 kb on + strand at 195.683 kb on + strand at 195.766 kb on + strand at 195.766 kb on + strand at 195.766 kb on + strand at 195.766 kb on + strand at 195.767 kb on - strand at 195.767 kb on - strand at 195.767 kb on - strand at 195.767 kb on - strand at 195.774 kb on + strand at 195.774 kb on + strand at 195.774 kb on + strand at 195.775 kb on - strand at 195.775 kb on - strand at 195.775 kb on - strand at 195.776 kb on + strand at 195.776 kb on + strand at 195.777 kb on - strand at 195.777 kb on - strand at 195.777 kb on - strand at 195.784 kb on + strand at 195.784 kb on + strand at 195.785 kb on - strand at 195.785 kb on - strand at 195.785 kb on - strand at 195.871 kb on + strand at 195.871 kb on + strand at 195.906 kb on + strand at 195.906 kb on + strand at 195.907 kb on - strand at 195.907 kb on - strand at 195.907 kb on - strand at 195.977 kb on - strand, within H281DRAFT_02073 at 195.977 kb on - strand, within H281DRAFT_02073 at 195.977 kb on - strand, within H281DRAFT_02073 at 195.978 kb on + strand, within H281DRAFT_02073 at 195.978 kb on + strand, within H281DRAFT_02073 at 195.979 kb on - strand, within H281DRAFT_02073 at 196.109 kb on + strand, within H281DRAFT_02073 at 196.109 kb on + strand, within H281DRAFT_02073 at 196.109 kb on + strand, within H281DRAFT_02073 at 196.110 kb on - strand, within H281DRAFT_02073 at 196.110 kb on - strand, within H281DRAFT_02073 at 196.110 kb on - strand, within H281DRAFT_02073 at 196.110 kb on - strand, within H281DRAFT_02073 at 196.110 kb on - strand, within H281DRAFT_02073 at 196.113 kb on + strand, within H281DRAFT_02073 at 196.113 kb on + strand, within H281DRAFT_02073 at 196.113 kb on + strand, within H281DRAFT_02073 at 196.426 kb on - strand, within H281DRAFT_02073 at 196.497 kb on + strand, within H281DRAFT_02073 at 196.498 kb on - strand, within H281DRAFT_02073 at 196.509 kb on - strand, within H281DRAFT_02073 at 196.624 kb on + strand at 196.631 kb on + strand at 196.646 kb on + strand at 196.647 kb on - strand at 196.687 kb on + strand at 196.687 kb on + strand at 196.687 kb on + strand at 196.688 kb on - strand at 196.688 kb on - strand at 196.688 kb on - strand at 196.698 kb on + strand at 196.698 kb on + strand at 196.699 kb on - strand at 196.768 kb on + strand at 196.769 kb on - strand at 196.769 kb on - strand at 196.772 kb on + strand, within H281DRAFT_02074 at 196.772 kb on + strand, within H281DRAFT_02074 at 196.772 kb on + strand, within H281DRAFT_02074 at 196.772 kb on + strand, within H281DRAFT_02074 at 196.773 kb on - strand, within H281DRAFT_02074 at 196.773 kb on - strand, within H281DRAFT_02074 at 196.773 kb on - strand, within H281DRAFT_02074 at 196.773 kb on - strand, within H281DRAFT_02074 at 197.044 kb on + strand at 197.046 kb on + strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.069 kb on + strand at 197.070 kb on - strand at 197.070 kb on - strand at 197.071 kb on + strand at 197.071 kb on + strand at 197.071 kb on + strand at 197.072 kb on - strand at 197.072 kb on - strand at 197.348 kb on + strand at 197.348 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 194,870 + H281DRAFT_02072 0.40 +0.4 194,882 + H281DRAFT_02072 0.41 +0.3 194,883 - H281DRAFT_02072 0.41 -0.1 194,965 - H281DRAFT_02072 0.47 +0.1 194,987 + H281DRAFT_02072 0.49 -0.0 194,988 - H281DRAFT_02072 0.49 +1.3 194,988 - H281DRAFT_02072 0.49 +0.6 195,035 + H281DRAFT_02072 0.53 +0.1 195,035 + H281DRAFT_02072 0.53 +0.0 195,036 - H281DRAFT_02072 0.53 -1.0 195,036 - H281DRAFT_02072 0.53 -1.1 195,073 + H281DRAFT_02072 0.56 +1.1 195,074 - H281DRAFT_02072 0.56 +1.8 195,206 + H281DRAFT_02072 0.66 +0.9 195,206 + H281DRAFT_02072 0.66 +0.1 195,206 + -0.2 195,207 - H281DRAFT_02072 0.66 +0.1 195,207 - H281DRAFT_02072 0.66 -0.7 195,207 - H281DRAFT_02072 0.66 -1.8 195,277 + H281DRAFT_02072 0.72 -2.2 195,312 - H281DRAFT_02072 0.74 +1.0 195,375 + H281DRAFT_02072 0.79 +1.8 195,375 + H281DRAFT_02072 0.79 +1.0 195,375 + H281DRAFT_02072 0.79 +0.6 195,376 - H281DRAFT_02072 0.79 +0.5 195,499 + H281DRAFT_02072 0.89 +0.3 195,500 - H281DRAFT_02072 0.89 +0.2 195,500 - H281DRAFT_02072 0.89 +1.1 195,501 + H281DRAFT_02072 0.89 +0.3 195,501 + H281DRAFT_02072 0.89 -0.3 195,501 + H281DRAFT_02072 0.89 -0.4 195,501 + +0.8 195,502 - H281DRAFT_02072 0.89 +0.0 195,502 - H281DRAFT_02072 0.89 -0.3 195,502 - H281DRAFT_02072 0.89 +1.6 195,638 + +1.3 195,639 - +0.1 195,683 + +0.1 195,683 + -0.1 195,766 + +0.5 195,766 + -0.2 195,766 + +0.5 195,766 + +0.9 195,767 - -0.0 195,767 - -0.8 195,767 - +0.4 195,767 - -0.4 195,774 + +0.6 195,774 + -0.8 195,774 + -0.9 195,775 - -0.9 195,775 - +0.3 195,775 - +0.7 195,776 + -0.2 195,776 + +0.7 195,777 - +0.1 195,777 - -0.0 195,777 - +0.1 195,784 + -0.1 195,784 + -0.4 195,785 - -0.3 195,785 - +0.1 195,785 - -1.2 195,871 + -0.3 195,871 + +1.0 195,906 + -0.9 195,906 + -2.8 195,907 - +1.1 195,907 - +0.2 195,907 - -3.4 195,977 - H281DRAFT_02073 0.18 +0.3 195,977 - H281DRAFT_02073 0.18 +0.3 195,977 - H281DRAFT_02073 0.18 -0.3 195,978 + H281DRAFT_02073 0.18 +1.6 195,978 + H281DRAFT_02073 0.18 +0.1 195,979 - H281DRAFT_02073 0.18 +0.1 196,109 + H281DRAFT_02073 0.34 -0.3 196,109 + H281DRAFT_02073 0.34 -0.7 196,109 + H281DRAFT_02073 0.34 +0.3 196,110 - H281DRAFT_02073 0.34 -0.1 196,110 - H281DRAFT_02073 0.34 +0.0 196,110 - H281DRAFT_02073 0.34 +0.6 196,110 - H281DRAFT_02073 0.34 +0.4 196,110 - H281DRAFT_02073 0.34 +0.8 196,113 + H281DRAFT_02073 0.35 +0.0 196,113 + H281DRAFT_02073 0.35 -2.1 196,113 + H281DRAFT_02073 0.35 -2.8 196,426 - H281DRAFT_02073 0.75 -1.8 196,497 + H281DRAFT_02073 0.84 +0.1 196,498 - H281DRAFT_02073 0.84 +0.3 196,509 - H281DRAFT_02073 0.85 +0.8 196,624 + -0.0 196,631 + -0.6 196,646 + +0.2 196,647 - -0.8 196,687 + -0.0 196,687 + +0.5 196,687 + +1.1 196,688 - +0.3 196,688 - +0.4 196,688 - -0.1 196,698 + -0.2 196,698 + -1.0 196,699 - -0.3 196,768 + +1.7 196,769 - -0.6 196,769 - +0.5 196,772 + H281DRAFT_02074 0.10 +0.7 196,772 + H281DRAFT_02074 0.10 +0.2 196,772 + H281DRAFT_02074 0.10 +0.1 196,772 + H281DRAFT_02074 0.10 -0.9 196,773 - H281DRAFT_02074 0.11 +0.4 196,773 - H281DRAFT_02074 0.11 -0.2 196,773 - H281DRAFT_02074 0.11 +0.9 196,773 - H281DRAFT_02074 0.11 -0.5 197,044 + +0.4 197,046 + +1.3 197,069 + -1.2 197,069 + +0.1 197,069 + -0.3 197,069 + +0.1 197,069 + -1.0 197,069 + -0.7 197,070 - +1.4 197,070 - +0.4 197,071 + -1.2 197,071 + -2.8 197,071 + -0.2 197,072 - +0.3 197,072 - -0.5 197,348 + -0.1 197,348 + +0.1
Or see this region's nucleotide sequence