Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01894

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01893 and H281DRAFT_01894 are separated by 93 nucleotidesH281DRAFT_01894 and H281DRAFT_01895 are separated by 29 nucleotides H281DRAFT_01893: H281DRAFT_01893 - D-serine dehydratase, at 5,651 to 6,928 _01893 H281DRAFT_01894: H281DRAFT_01894 - transcriptional regulator, MarR family, at 7,022 to 7,525 _01894 H281DRAFT_01895: H281DRAFT_01895 - drug resistance transporter, EmrB/QacA subfamily, at 7,555 to 9,195 _01895 Position (kb) 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6.273 kb on + strand, within H281DRAFT_01893at 6.274 kb on - strand, within H281DRAFT_01893at 6.275 kb on + strand, within H281DRAFT_01893at 6.275 kb on + strand, within H281DRAFT_01893at 6.275 kb on + strand, within H281DRAFT_01893at 6.275 kb on + strand, within H281DRAFT_01893at 6.410 kb on + strand, within H281DRAFT_01893at 6.599 kb on + strand, within H281DRAFT_01893at 6.599 kb on + strand, within H281DRAFT_01893at 6.599 kb on + strand, within H281DRAFT_01893at 6.600 kb on - strand, within H281DRAFT_01893at 6.600 kb on - strand, within H281DRAFT_01893at 6.600 kb on - strand, within H281DRAFT_01893at 6.726 kb on + strand, within H281DRAFT_01893at 6.776 kb on + strand, within H281DRAFT_01893at 6.776 kb on + strand, within H281DRAFT_01893at 6.777 kb on - strand, within H281DRAFT_01893at 6.859 kb on + strandat 6.860 kb on - strandat 6.894 kb on - strandat 7.253 kb on + strand, within H281DRAFT_01894at 7.254 kb on - strand, within H281DRAFT_01894at 7.322 kb on + strand, within H281DRAFT_01894at 7.664 kb on - strandat 7.664 kb on - strandat 7.664 kb on - strandat 7.853 kb on + strand, within H281DRAFT_01895at 7.853 kb on + strand, within H281DRAFT_01895at 7.853 kb on + strand, within H281DRAFT_01895at 7.854 kb on - strand, within H281DRAFT_01895at 7.854 kb on - strand, within H281DRAFT_01895at 7.854 kb on - strand, within H281DRAFT_01895at 7.854 kb on - strand, within H281DRAFT_01895at 7.854 kb on - strand, within H281DRAFT_01895at 7.854 kb on - strand, within H281DRAFT_01895at 7.857 kb on + strand, within H281DRAFT_01895at 7.857 kb on + strand, within H281DRAFT_01895at 7.857 kb on + strand, within H281DRAFT_01895at 7.857 kb on + strand, within H281DRAFT_01895at 7.857 kb on + strand, within H281DRAFT_01895at 7.857 kb on + strand, within H281DRAFT_01895at 7.857 kb on + strand, within H281DRAFT_01895at 7.857 kb on + strand, within H281DRAFT_01895at 7.858 kb on - strand, within H281DRAFT_01895at 7.858 kb on - strand, within H281DRAFT_01895at 7.858 kb on - strand, within H281DRAFT_01895at 7.858 kb on - strand, within H281DRAFT_01895at 7.858 kb on - strand, within H281DRAFT_01895at 8.111 kb on + strand, within H281DRAFT_01895at 8.111 kb on + strand, within H281DRAFT_01895at 8.112 kb on - strand, within H281DRAFT_01895at 8.112 kb on - strand, within H281DRAFT_01895at 8.176 kb on - strand, within H281DRAFT_01895at 8.304 kb on + strand, within H281DRAFT_01895at 8.304 kb on + strand, within H281DRAFT_01895at 8.304 kb on + strand, within H281DRAFT_01895at 8.304 kb on + strand, within H281DRAFT_01895at 8.305 kb on - strand, within H281DRAFT_01895at 8.308 kb on + strand, within H281DRAFT_01895at 8.390 kb on + strand, within H281DRAFT_01895

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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6,273 + H281DRAFT_01893 0.49 +0.5
6,274 - H281DRAFT_01893 0.49 -0.6
6,275 + H281DRAFT_01893 0.49 -0.1
6,275 + H281DRAFT_01893 0.49 -0.5
6,275 + H281DRAFT_01893 0.49 +0.7
6,275 + H281DRAFT_01893 0.49 -0.5
6,410 + H281DRAFT_01893 0.59 +0.7
6,599 + H281DRAFT_01893 0.74 +0.7
6,599 + H281DRAFT_01893 0.74 +0.5
6,599 + H281DRAFT_01893 0.74 +0.2
6,600 - H281DRAFT_01893 0.74 -2.6
6,600 - H281DRAFT_01893 0.74 +0.1
6,600 - H281DRAFT_01893 0.74 -2.7
6,726 + H281DRAFT_01893 0.84 -0.2
6,776 + H281DRAFT_01893 0.88 +0.1
6,776 + H281DRAFT_01893 0.88 +0.1
6,777 - H281DRAFT_01893 0.88 +0.4
6,859 + +0.1
6,860 - +0.3
6,894 - -0.2
7,253 + H281DRAFT_01894 0.46 +1.0
7,254 - H281DRAFT_01894 0.46 +1.5
7,322 + H281DRAFT_01894 0.60 +1.3
7,664 - +0.8
7,664 - -1.0
7,664 - -1.5
7,853 + H281DRAFT_01895 0.18 +1.3
7,853 + H281DRAFT_01895 0.18 -1.3
7,853 + H281DRAFT_01895 0.18 -0.8
7,854 - H281DRAFT_01895 0.18 -0.4
7,854 - H281DRAFT_01895 0.18 -1.1
7,854 - H281DRAFT_01895 0.18 -0.7
7,854 - H281DRAFT_01895 0.18 -1.0
7,854 - H281DRAFT_01895 0.18 -1.3
7,854 - H281DRAFT_01895 0.18 -3.7
7,857 + H281DRAFT_01895 0.18 -1.5
7,857 + H281DRAFT_01895 0.18 -0.5
7,857 + H281DRAFT_01895 0.18 +0.9
7,857 + H281DRAFT_01895 0.18 -1.0
7,857 + H281DRAFT_01895 0.18 +0.1
7,857 + H281DRAFT_01895 0.18 +0.1
7,857 + H281DRAFT_01895 0.18 +0.7
7,857 + H281DRAFT_01895 0.18 -0.9
7,858 - H281DRAFT_01895 0.18 +0.0
7,858 - H281DRAFT_01895 0.18 -2.6
7,858 - H281DRAFT_01895 0.18 -0.5
7,858 - H281DRAFT_01895 0.18 -0.6
7,858 - H281DRAFT_01895 0.18 -0.6
8,111 + H281DRAFT_01895 0.34 -0.2
8,111 + H281DRAFT_01895 0.34 +0.0
8,112 - H281DRAFT_01895 0.34 +0.7
8,112 - H281DRAFT_01895 0.34 +1.8
8,176 - H281DRAFT_01895 0.38 -1.0
8,304 + H281DRAFT_01895 0.46 -0.2
8,304 + H281DRAFT_01895 0.46 +0.4
8,304 + H281DRAFT_01895 0.46 -1.3
8,304 + H281DRAFT_01895 0.46 +0.0
8,305 - H281DRAFT_01895 0.46 +0.3
8,308 + H281DRAFT_01895 0.46 -0.0
8,390 + H281DRAFT_01895 0.51 -0.9

Or see this region's nucleotide sequence