Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01688

Experiment: adipate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01686 and H281DRAFT_01687 are separated by 81 nucleotidesH281DRAFT_01687 and H281DRAFT_01688 are separated by 116 nucleotidesH281DRAFT_01688 and H281DRAFT_01689 are separated by 219 nucleotides H281DRAFT_01686: H281DRAFT_01686 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 569,292 to 570,188 _01686 H281DRAFT_01687: H281DRAFT_01687 - carbonic anhydrase, at 570,270 to 570,812 _01687 H281DRAFT_01688: H281DRAFT_01688 - aliphatic nitrilase, at 570,929 to 571,915 _01688 H281DRAFT_01689: H281DRAFT_01689 - transcriptional regulator, AraC family with amidase-like domain, at 572,135 to 573,091 _01689 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2at 569.972 kb on - strand, within H281DRAFT_01686at 570.172 kb on + strandat 570.173 kb on - strandat 570.675 kb on + strand, within H281DRAFT_01687at 571.423 kb on - strand, within H281DRAFT_01688at 571.522 kb on - strand, within H281DRAFT_01688at 571.759 kb on - strand, within H281DRAFT_01688at 571.949 kb on - strandat 571.968 kb on + strandat 571.969 kb on - strandat 572.237 kb on + strand, within H281DRAFT_01689at 572.290 kb on + strand, within H281DRAFT_01689at 572.783 kb on - strand, within H281DRAFT_01689

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
remove
569,972 - H281DRAFT_01686 0.76 -0.5
570,172 + -0.8
570,173 - +0.2
570,675 + H281DRAFT_01687 0.75 -0.0
571,423 - H281DRAFT_01688 0.50 +0.2
571,522 - H281DRAFT_01688 0.60 +0.6
571,759 - H281DRAFT_01688 0.84 +2.5
571,949 - -1.8
571,968 + +0.3
571,969 - -2.5
572,237 + H281DRAFT_01689 0.11 +0.9
572,290 + H281DRAFT_01689 0.16 +1.3
572,783 - H281DRAFT_01689 0.68 -0.4

Or see this region's nucleotide sequence