Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01655 and H281DRAFT_01656 are separated by 70 nucleotides H281DRAFT_01656 and H281DRAFT_01657 are separated by 4 nucleotides H281DRAFT_01657 and H281DRAFT_01658 overlap by 4 nucleotides H281DRAFT_01658 and H281DRAFT_01659 are separated by 16 nucleotides H281DRAFT_01659 and H281DRAFT_01660 are separated by 87 nucleotides
H281DRAFT_01655: H281DRAFT_01655 - 4-oxalocrotonate tautomerase family enzyme, at 537,337 to 537,711
_01655
H281DRAFT_01656: H281DRAFT_01656 - hypothetical protein, at 537,782 to 538,159
_01656
H281DRAFT_01657: H281DRAFT_01657 - SnoaL-like domain-containing protein, at 538,164 to 538,679
_01657
H281DRAFT_01658: H281DRAFT_01658 - amidase, at 538,676 to 539,818
_01658
H281DRAFT_01659: H281DRAFT_01659 - 3-oxoacyl-[acyl-carrier protein] reductase, at 539,835 to 540,578
_01659
H281DRAFT_01660: H281DRAFT_01660 - 4-hydroxyphenylacetate 3-monooxygenase reductase component (EC 1.14.13.3), at 540,666 to 541,211
_01660
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 537.729 kb on - strand at 537.767 kb on + strand at 537.791 kb on - strand at 537.927 kb on + strand, within H281DRAFT_01656 at 537.998 kb on + strand, within H281DRAFT_01656 at 538.076 kb on + strand at 538.077 kb on - strand, within H281DRAFT_01656 at 538.248 kb on + strand, within H281DRAFT_01657 at 538.249 kb on - strand, within H281DRAFT_01657 at 538.522 kb on - strand, within H281DRAFT_01657 at 538.883 kb on - strand, within H281DRAFT_01658 at 538.883 kb on - strand, within H281DRAFT_01658 at 538.960 kb on + strand, within H281DRAFT_01658 at 539.354 kb on + strand, within H281DRAFT_01658 at 539.690 kb on - strand, within H281DRAFT_01658 at 540.155 kb on - strand, within H281DRAFT_01659 at 540.291 kb on + strand, within H281DRAFT_01659 at 540.604 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 537,729 - -0.1 537,767 + -2.0 537,791 - -0.3 537,927 + H281DRAFT_01656 0.38 -2.2 537,998 + H281DRAFT_01656 0.57 -2.8 538,076 + -0.0 538,077 - H281DRAFT_01656 0.78 -0.6 538,248 + H281DRAFT_01657 0.16 -1.9 538,249 - H281DRAFT_01657 0.16 +0.7 538,522 - H281DRAFT_01657 0.69 +0.4 538,883 - H281DRAFT_01658 0.18 +0.5 538,883 - H281DRAFT_01658 0.18 -0.7 538,960 + H281DRAFT_01658 0.25 -0.3 539,354 + H281DRAFT_01658 0.59 -1.7 539,690 - H281DRAFT_01658 0.89 +0.1 540,155 - H281DRAFT_01659 0.43 -0.6 540,291 + H281DRAFT_01659 0.61 -0.9 540,604 - +0.6
Or see this region's nucleotide sequence