Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01584

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01582 and H281DRAFT_01583 overlap by 4 nucleotidesH281DRAFT_01583 and H281DRAFT_01584 are separated by 31 nucleotidesH281DRAFT_01584 and H281DRAFT_01585 are separated by 41 nucleotidesH281DRAFT_01585 and H281DRAFT_01586 overlap by 4 nucleotides H281DRAFT_01582: H281DRAFT_01582 - nicotinate dehydrogenase subunit B, at 458,242 to 461,865 _01582 H281DRAFT_01583: H281DRAFT_01583 - nicotinate dehydrogenase subunit A, at 461,862 to 462,368 _01583 H281DRAFT_01584: H281DRAFT_01584 - enamidase, at 462,400 to 463,599 _01584 H281DRAFT_01585: H281DRAFT_01585 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 463,641 to 464,354 _01585 H281DRAFT_01586: H281DRAFT_01586 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 464,351 to 465,160 _01586 Position (kb) 462 463 464Strain fitness (log2 ratio) -2 -1 0 1at 461.561 kb on - strandat 461.697 kb on + strandat 461.805 kb on - strandat 462.436 kb on - strandat 462.885 kb on + strand, within H281DRAFT_01584at 463.654 kb on + strandat 463.654 kb on + strandat 464.311 kb on + strandat 464.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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461,561 - +0.1
461,697 + -1.3
461,805 - -2.7
462,436 - +0.7
462,885 + H281DRAFT_01584 0.40 -0.8
463,654 + +1.3
463,654 + -0.1
464,311 + +0.5
464,312 - -0.9

Or see this region's nucleotide sequence