Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01117

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01116 and H281DRAFT_01117 are separated by 138 nucleotidesH281DRAFT_01117 and H281DRAFT_01118 are separated by 12 nucleotides H281DRAFT_01116: H281DRAFT_01116 - deoxyribose kinase (EC 2.7.1.15) (from data), at 1,256,232 to 1,257,194 _01116 H281DRAFT_01117: H281DRAFT_01117 - acetaldehyde dehydrogenase (EC 1.2.1.3) (from data), at 1,257,333 to 1,259,720 _01117 H281DRAFT_01118: H281DRAFT_01118 - deoxyribose-phosphate aldolase, at 1,259,733 to 1,260,746 _01118 Position (kb) 1257 1258 1259 1260Strain fitness (log2 ratio) -2 -1 0 1 2at 1257.146 kb on - strandat 1257.273 kb on + strandat 1257.344 kb on - strandat 1257.622 kb on + strand, within H281DRAFT_01117at 1257.623 kb on - strand, within H281DRAFT_01117at 1257.965 kb on - strand, within H281DRAFT_01117at 1258.271 kb on - strand, within H281DRAFT_01117at 1258.271 kb on - strand, within H281DRAFT_01117at 1258.307 kb on - strand, within H281DRAFT_01117at 1258.583 kb on - strand, within H281DRAFT_01117at 1260.206 kb on - strand, within H281DRAFT_01118at 1260.379 kb on + strand, within H281DRAFT_01118

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,257,146 - +0.3
1,257,273 + +0.7
1,257,344 - -2.1
1,257,622 + H281DRAFT_01117 0.12 +2.0
1,257,623 - H281DRAFT_01117 0.12 +0.6
1,257,965 - H281DRAFT_01117 0.26 +0.3
1,258,271 - H281DRAFT_01117 0.39 -0.8
1,258,271 - H281DRAFT_01117 0.39 +0.9
1,258,307 - H281DRAFT_01117 0.41 +0.5
1,258,583 - H281DRAFT_01117 0.52 +0.6
1,260,206 - H281DRAFT_01118 0.47 -0.3
1,260,379 + H281DRAFT_01118 0.64 -2.6

Or see this region's nucleotide sequence