Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01033

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01032 and H281DRAFT_01033 are separated by 127 nucleotidesH281DRAFT_01033 and H281DRAFT_01034 are separated by 33 nucleotides H281DRAFT_01032: H281DRAFT_01032 - peptide/nickel transport system ATP-binding protein, at 1,159,935 to 1,160,957 _01032 H281DRAFT_01033: H281DRAFT_01033 - DNA-binding transcriptional regulator, LysR family, at 1,161,085 to 1,161,966 _01033 H281DRAFT_01034: H281DRAFT_01034 - Outer membrane protein (porin), at 1,162,000 to 1,162,827 _01034 Position (kb) 1161 1162Strain fitness (log2 ratio) -1 0 1 2at 1160.191 kb on + strand, within H281DRAFT_01032at 1160.192 kb on - strand, within H281DRAFT_01032at 1160.192 kb on - strand, within H281DRAFT_01032at 1160.255 kb on - strand, within H281DRAFT_01032at 1160.255 kb on - strand, within H281DRAFT_01032at 1160.255 kb on - strand, within H281DRAFT_01032at 1160.307 kb on - strand, within H281DRAFT_01032at 1160.621 kb on - strand, within H281DRAFT_01032at 1160.922 kb on + strandat 1160.922 kb on + strandat 1160.922 kb on + strandat 1160.923 kb on - strandat 1160.923 kb on - strandat 1161.013 kb on - strandat 1161.587 kb on + strand, within H281DRAFT_01033at 1162.125 kb on - strand, within H281DRAFT_01034at 1162.127 kb on + strand, within H281DRAFT_01034at 1162.136 kb on + strand, within H281DRAFT_01034at 1162.189 kb on - strand, within H281DRAFT_01034at 1162.274 kb on + strand, within H281DRAFT_01034at 1162.275 kb on - strand, within H281DRAFT_01034at 1162.422 kb on - strand, within H281DRAFT_01034at 1162.425 kb on + strand, within H281DRAFT_01034at 1162.426 kb on - strand, within H281DRAFT_01034

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,160,191 + H281DRAFT_01032 0.25 +0.8
1,160,192 - H281DRAFT_01032 0.25 +1.4
1,160,192 - H281DRAFT_01032 0.25 +0.7
1,160,255 - H281DRAFT_01032 0.31 -0.3
1,160,255 - H281DRAFT_01032 0.31 +0.5
1,160,255 - H281DRAFT_01032 0.31 +1.5
1,160,307 - H281DRAFT_01032 0.36 -0.4
1,160,621 - H281DRAFT_01032 0.67 +0.8
1,160,922 + -0.2
1,160,922 + +0.8
1,160,922 + +1.2
1,160,923 - -0.4
1,160,923 - -0.1
1,161,013 - +1.7
1,161,587 + H281DRAFT_01033 0.57 +0.4
1,162,125 - H281DRAFT_01034 0.15 +1.2
1,162,127 + H281DRAFT_01034 0.15 -1.6
1,162,136 + H281DRAFT_01034 0.16 -0.5
1,162,189 - H281DRAFT_01034 0.23 -0.3
1,162,274 + H281DRAFT_01034 0.33 +0.6
1,162,275 - H281DRAFT_01034 0.33 +2.2
1,162,422 - H281DRAFT_01034 0.51 -0.3
1,162,425 + H281DRAFT_01034 0.51 -0.6
1,162,426 - H281DRAFT_01034 0.51 -0.6

Or see this region's nucleotide sequence