Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01006

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01005 and H281DRAFT_01006 are separated by 342 nucleotidesH281DRAFT_01006 and H281DRAFT_01007 are separated by 892 nucleotides H281DRAFT_01005: H281DRAFT_01005 - PilZ domain-containing protein, at 1,131,149 to 1,132,036 _01005 H281DRAFT_01006: H281DRAFT_01006 - Fatty acid hydroxylase superfamily protein, at 1,132,379 to 1,133,080 _01006 H281DRAFT_01007: H281DRAFT_01007 - hypothetical protein, at 1,133,973 to 1,134,182 _01007 Position (kb) 1132 1133 1134Strain fitness (log2 ratio) -1 0 1 2at 1131.495 kb on - strand, within H281DRAFT_01005at 1132.034 kb on + strandat 1132.082 kb on - strandat 1132.151 kb on + strandat 1132.155 kb on + strandat 1132.156 kb on - strandat 1132.248 kb on + strandat 1132.544 kb on - strand, within H281DRAFT_01006at 1132.596 kb on + strand, within H281DRAFT_01006at 1132.668 kb on - strand, within H281DRAFT_01006at 1132.756 kb on - strand, within H281DRAFT_01006at 1132.810 kb on - strand, within H281DRAFT_01006at 1133.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,131,495 - H281DRAFT_01005 0.39 -0.2
1,132,034 + -0.5
1,132,082 - -0.9
1,132,151 + -0.2
1,132,155 + -0.6
1,132,156 - +0.4
1,132,248 + -0.4
1,132,544 - H281DRAFT_01006 0.24 -0.1
1,132,596 + H281DRAFT_01006 0.31 +0.8
1,132,668 - H281DRAFT_01006 0.41 +2.3
1,132,756 - H281DRAFT_01006 0.54 -0.6
1,132,810 - H281DRAFT_01006 0.61 +0.9
1,133,272 + +0.3

Or see this region's nucleotide sequence