Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00965

Experiment: adipate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00963 and H281DRAFT_00964 are separated by 171 nucleotidesH281DRAFT_00964 and H281DRAFT_00965 are separated by 382 nucleotidesH281DRAFT_00965 and H281DRAFT_00966 are separated by 27 nucleotides H281DRAFT_00963: H281DRAFT_00963 - malate synthase, at 1,076,299 to 1,078,470 _00963 H281DRAFT_00964: H281DRAFT_00964 - glc operon protein GlcG, at 1,078,642 to 1,079,046 _00964 H281DRAFT_00965: H281DRAFT_00965 - hypothetical protein, at 1,079,429 to 1,080,313 _00965 H281DRAFT_00966: H281DRAFT_00966 - uroporphyrinogen-III C-methyltransferase (EC 2.1.1.107), at 1,080,341 to 1,081,120 _00966 Position (kb) 1079 1080 1081Strain fitness (log2 ratio) -2 -1 0 1 2at 1078.824 kb on - strand, within H281DRAFT_00964at 1078.880 kb on + strand, within H281DRAFT_00964at 1078.881 kb on - strand, within H281DRAFT_00964at 1078.881 kb on - strand, within H281DRAFT_00964at 1079.150 kb on - strandat 1079.150 kb on - strandat 1079.150 kb on - strandat 1079.340 kb on + strandat 1080.240 kb on + strandat 1080.311 kb on + strandat 1080.314 kb on + strandat 1080.407 kb on - strandat 1080.612 kb on + strand, within H281DRAFT_00966at 1080.613 kb on - strand, within H281DRAFT_00966at 1081.133 kb on - strandat 1081.133 kb on - strandat 1081.298 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction adipate (C)
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1,078,824 - H281DRAFT_00964 0.45 +0.2
1,078,880 + H281DRAFT_00964 0.59 -0.6
1,078,881 - H281DRAFT_00964 0.59 +0.7
1,078,881 - H281DRAFT_00964 0.59 +1.1
1,079,150 - +1.9
1,079,150 - -0.1
1,079,150 - +0.2
1,079,340 + +0.9
1,080,240 + +1.9
1,080,311 + +0.4
1,080,314 + -1.8
1,080,407 - +0.7
1,080,612 + H281DRAFT_00966 0.35 -1.1
1,080,613 - H281DRAFT_00966 0.35 -2.3
1,081,133 - +0.7
1,081,133 - +0.6
1,081,298 - +0.9

Or see this region's nucleotide sequence