Experiment: adipate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00944 and H281DRAFT_00945 are separated by 29 nucleotides H281DRAFT_00945 and H281DRAFT_00946 are separated by 56 nucleotides H281DRAFT_00946 and H281DRAFT_00947 overlap by 1 nucleotides
H281DRAFT_00944: H281DRAFT_00944 - putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase, at 1,049,727 to 1,051,124
_00944
H281DRAFT_00945: H281DRAFT_00945 - UDP-glucose dehydrogenase, at 1,051,154 to 1,052,602
_00945
H281DRAFT_00946: H281DRAFT_00946 - protein-tyrosine phosphatase, at 1,052,659 to 1,053,114
_00946
H281DRAFT_00947: H281DRAFT_00947 - polysaccharide export outer membrane protein, at 1,053,114 to 1,054,379
_00947
Position (kb) 1051
1052
1053 Strain fitness (log2 ratio) -1
0
1 at 1050.304 kb on - strand, within H281DRAFT_00944 at 1050.669 kb on - strand, within H281DRAFT_00944 at 1050.900 kb on + strand, within H281DRAFT_00944 at 1050.900 kb on + strand, within H281DRAFT_00944 at 1050.900 kb on + strand, within H281DRAFT_00944 at 1050.901 kb on - strand, within H281DRAFT_00944 at 1050.901 kb on - strand, within H281DRAFT_00944 at 1050.901 kb on - strand, within H281DRAFT_00944 at 1050.922 kb on - strand, within H281DRAFT_00944 at 1050.922 kb on - strand, within H281DRAFT_00944 at 1051.038 kb on + strand at 1051.039 kb on - strand at 1051.120 kb on - strand at 1051.148 kb on + strand at 1051.151 kb on + strand at 1051.151 kb on + strand at 1051.151 kb on + strand at 1051.152 kb on - strand at 1051.727 kb on + strand, within H281DRAFT_00945 at 1051.728 kb on - strand, within H281DRAFT_00945 at 1051.763 kb on + strand, within H281DRAFT_00945 at 1051.796 kb on + strand, within H281DRAFT_00945 at 1051.797 kb on - strand, within H281DRAFT_00945 at 1051.832 kb on + strand, within H281DRAFT_00945 at 1052.153 kb on - strand, within H281DRAFT_00945 at 1052.358 kb on + strand, within H281DRAFT_00945 at 1052.454 kb on - strand, within H281DRAFT_00945 at 1052.872 kb on + strand, within H281DRAFT_00946 at 1052.873 kb on - strand, within H281DRAFT_00946 at 1053.128 kb on + strand at 1053.142 kb on - strand at 1053.334 kb on - strand, within H281DRAFT_00947 at 1053.441 kb on + strand, within H281DRAFT_00947
Per-strain Table
Position Strand Gene LocusTag Fraction adipate (C) remove 1,050,304 - H281DRAFT_00944 0.41 +1.0 1,050,669 - H281DRAFT_00944 0.67 +0.6 1,050,900 + H281DRAFT_00944 0.84 +0.4 1,050,900 + H281DRAFT_00944 0.84 -0.1 1,050,900 + H281DRAFT_00944 0.84 -0.0 1,050,901 - H281DRAFT_00944 0.84 -0.5 1,050,901 - H281DRAFT_00944 0.84 +0.0 1,050,901 - H281DRAFT_00944 0.84 -1.2 1,050,922 - H281DRAFT_00944 0.85 -0.7 1,050,922 - H281DRAFT_00944 0.85 +1.1 1,051,038 + -0.4 1,051,039 - +1.6 1,051,120 - +0.9 1,051,148 + +0.9 1,051,151 + +1.2 1,051,151 + +0.4 1,051,151 + +0.2 1,051,152 - +0.5 1,051,727 + H281DRAFT_00945 0.40 +0.6 1,051,728 - H281DRAFT_00945 0.40 +0.1 1,051,763 + H281DRAFT_00945 0.42 -0.0 1,051,796 + H281DRAFT_00945 0.44 +0.8 1,051,797 - H281DRAFT_00945 0.44 +0.2 1,051,832 + H281DRAFT_00945 0.47 +0.3 1,052,153 - H281DRAFT_00945 0.69 -0.3 1,052,358 + H281DRAFT_00945 0.83 +0.2 1,052,454 - H281DRAFT_00945 0.90 -0.1 1,052,872 + H281DRAFT_00946 0.47 -0.5 1,052,873 - H281DRAFT_00946 0.47 -0.6 1,053,128 + -0.2 1,053,142 - +1.0 1,053,334 - H281DRAFT_00947 0.17 -1.4 1,053,441 + H281DRAFT_00947 0.26 -0.8
Or see this region's nucleotide sequence