Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09560

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09550 and PGA1_c09560 are separated by 124 nucleotidesPGA1_c09560 and PGA1_c09570 are separated by 3 nucleotidesPGA1_c09570 and PGA1_c09580 are separated by 4 nucleotidesPGA1_c09580 and PGA1_c09590 are separated by 79 nucleotides PGA1_c09550: PGA1_c09550 - Glutaminase (EC 3.5.1.2) (from data), at 979,991 to 980,905 _c09550 PGA1_c09560: PGA1_c09560 - UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD, at 981,030 to 982,427 _c09560 PGA1_c09570: PGA1_c09570 - putative HTH-type transcriptional regulator, MarR family, at 982,431 to 982,874 _c09570 PGA1_c09580: PGA1_c09580 - antibiotic biosynthesis monooxygenase-like protein, at 982,879 to 983,172 _c09580 PGA1_c09590: PGA1_c09590 - uncharacterized protein YhiN, at 983,252 to 984,433 _c09590 Position (kb) 981 982 983Strain fitness (log2 ratio) -2 -1 0 1at 980.066 kb on + strandat 980.074 kb on - strandat 980.113 kb on + strand, within PGA1_c09550at 980.206 kb on - strand, within PGA1_c09550at 980.238 kb on - strand, within PGA1_c09550at 980.291 kb on - strand, within PGA1_c09550at 980.358 kb on + strand, within PGA1_c09550at 980.358 kb on + strand, within PGA1_c09550at 980.400 kb on + strand, within PGA1_c09550at 980.408 kb on - strand, within PGA1_c09550at 980.408 kb on - strand, within PGA1_c09550at 980.408 kb on - strand, within PGA1_c09550at 980.408 kb on - strand, within PGA1_c09550at 980.487 kb on - strand, within PGA1_c09550at 980.515 kb on + strand, within PGA1_c09550at 980.515 kb on + strand, within PGA1_c09550at 980.520 kb on + strand, within PGA1_c09550at 980.536 kb on + strand, within PGA1_c09550at 980.544 kb on + strand, within PGA1_c09550at 980.556 kb on - strand, within PGA1_c09550at 980.623 kb on - strand, within PGA1_c09550at 980.635 kb on - strand, within PGA1_c09550at 980.675 kb on + strand, within PGA1_c09550at 980.675 kb on + strand, within PGA1_c09550at 980.675 kb on + strand, within PGA1_c09550at 980.683 kb on - strand, within PGA1_c09550at 980.683 kb on - strand, within PGA1_c09550at 980.683 kb on - strand, within PGA1_c09550at 980.683 kb on - strand, within PGA1_c09550at 980.701 kb on - strand, within PGA1_c09550at 980.701 kb on - strand, within PGA1_c09550at 980.719 kb on - strand, within PGA1_c09550at 980.745 kb on + strand, within PGA1_c09550at 980.745 kb on + strand, within PGA1_c09550at 980.745 kb on + strand, within PGA1_c09550at 980.753 kb on - strand, within PGA1_c09550at 980.796 kb on + strand, within PGA1_c09550at 980.802 kb on + strand, within PGA1_c09550at 980.810 kb on - strand, within PGA1_c09550at 980.847 kb on + strandat 980.850 kb on - strandat 980.855 kb on - strandat 980.938 kb on - strandat 981.020 kb on + strandat 982.421 kb on + strandat 982.423 kb on + strandat 982.423 kb on + strandat 982.531 kb on - strand, within PGA1_c09570at 982.564 kb on + strand, within PGA1_c09570at 982.590 kb on + strand, within PGA1_c09570at 982.590 kb on + strand, within PGA1_c09570at 982.594 kb on - strand, within PGA1_c09570at 982.598 kb on - strand, within PGA1_c09570at 982.608 kb on - strand, within PGA1_c09570at 982.726 kb on - strand, within PGA1_c09570at 982.727 kb on - strand, within PGA1_c09570at 982.820 kb on + strand, within PGA1_c09570at 982.828 kb on - strand, within PGA1_c09570at 982.830 kb on + strandat 982.830 kb on + strandat 982.849 kb on - strandat 982.882 kb on + strandat 982.885 kb on - strandat 982.885 kb on - strandat 982.890 kb on - strandat 982.913 kb on + strand, within PGA1_c09580at 982.913 kb on + strand, within PGA1_c09580at 982.921 kb on - strand, within PGA1_c09580at 983.013 kb on + strand, within PGA1_c09580at 983.085 kb on - strand, within PGA1_c09580at 983.132 kb on - strand, within PGA1_c09580at 983.138 kb on - strand, within PGA1_c09580at 983.250 kb on + strandat 983.250 kb on + strandat 983.258 kb on - strandat 983.284 kb on - strandat 983.297 kb on - strandat 983.297 kb on - strandat 983.330 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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980,066 + +0.2
980,074 - -0.5
980,113 + PGA1_c09550 0.13 +0.6
980,206 - PGA1_c09550 0.23 -0.6
980,238 - PGA1_c09550 0.27 +0.1
980,291 - PGA1_c09550 0.33 +0.0
980,358 + PGA1_c09550 0.40 +0.2
980,358 + PGA1_c09550 0.40 -0.8
980,400 + PGA1_c09550 0.45 +0.7
980,408 - PGA1_c09550 0.46 +0.2
980,408 - PGA1_c09550 0.46 -0.7
980,408 - PGA1_c09550 0.46 -0.3
980,408 - PGA1_c09550 0.46 -0.5
980,487 - PGA1_c09550 0.54 -0.5
980,515 + PGA1_c09550 0.57 -1.1
980,515 + PGA1_c09550 0.57 -2.0
980,520 + PGA1_c09550 0.58 -1.2
980,536 + PGA1_c09550 0.60 +0.0
980,544 + PGA1_c09550 0.60 -0.4
980,556 - PGA1_c09550 0.62 +0.3
980,623 - PGA1_c09550 0.69 -0.6
980,635 - PGA1_c09550 0.70 -0.8
980,675 + PGA1_c09550 0.75 +1.3
980,675 + PGA1_c09550 0.75 -0.5
980,675 + PGA1_c09550 0.75 +0.4
980,683 - PGA1_c09550 0.76 -0.9
980,683 - PGA1_c09550 0.76 -0.6
980,683 - PGA1_c09550 0.76 -1.0
980,683 - PGA1_c09550 0.76 +0.3
980,701 - PGA1_c09550 0.78 +0.4
980,701 - PGA1_c09550 0.78 -0.7
980,719 - PGA1_c09550 0.80 -1.2
980,745 + PGA1_c09550 0.82 -1.0
980,745 + PGA1_c09550 0.82 +0.0
980,745 + PGA1_c09550 0.82 -0.4
980,753 - PGA1_c09550 0.83 -1.1
980,796 + PGA1_c09550 0.88 -0.1
980,802 + PGA1_c09550 0.89 -1.4
980,810 - PGA1_c09550 0.90 +0.3
980,847 + -1.3
980,850 - -1.6
980,855 - +1.3
980,938 - -0.1
981,020 + +0.7
982,421 + +0.9
982,423 + +0.1
982,423 + -0.3
982,531 - PGA1_c09570 0.23 +0.8
982,564 + PGA1_c09570 0.30 +0.2
982,590 + PGA1_c09570 0.36 -0.6
982,590 + PGA1_c09570 0.36 +0.8
982,594 - PGA1_c09570 0.37 +0.8
982,598 - PGA1_c09570 0.38 -0.2
982,608 - PGA1_c09570 0.40 -0.0
982,726 - PGA1_c09570 0.66 -1.2
982,727 - PGA1_c09570 0.67 +0.7
982,820 + PGA1_c09570 0.88 -0.2
982,828 - PGA1_c09570 0.89 +0.7
982,830 + -1.0
982,830 + -0.9
982,849 - +0.8
982,882 + -0.4
982,885 - +0.0
982,885 - -1.0
982,890 - +0.3
982,913 + PGA1_c09580 0.12 -0.2
982,913 + PGA1_c09580 0.12 -0.2
982,921 - PGA1_c09580 0.14 +0.8
983,013 + PGA1_c09580 0.46 +0.1
983,085 - PGA1_c09580 0.70 +0.1
983,132 - PGA1_c09580 0.86 -1.3
983,138 - PGA1_c09580 0.88 +1.0
983,250 + -0.9
983,250 + +0.2
983,258 - +0.9
983,284 - -2.4
983,297 - -0.0
983,297 - +1.0
983,330 + +0.5

Or see this region's nucleotide sequence