Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_845 and HP15_846 overlap by 4 nucleotides HP15_846 and HP15_847 are separated by 40 nucleotides HP15_847 and HP15_848 are separated by 112 nucleotides HP15_848 and HP15_849 are separated by 125 nucleotides HP15_849 and HP15_850 are separated by 114 nucleotides
HP15_845: HP15_845 - sensory box/GGDEF family protein, at 863,426 to 865,702
_845
HP15_846: HP15_846 - DR1885-like metal-binding protein, at 865,699 to 866,307
_846
HP15_847: HP15_847 - hypothetical protein, at 866,348 to 866,476
_847
HP15_848: HP15_848 - protein containing DUF980, at 866,589 to 867,419
_848
HP15_849: HP15_849 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 867,545 to 868,237
_849
HP15_850: HP15_850 - GGDEF domain protein, at 868,352 to 869,392
_850
Position (kb) 866
867
868 Strain fitness (log2 ratio) -2
-1
0
1 at 865.591 kb on + strand at 865.630 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.655 kb on + strand at 865.704 kb on - strand at 865.833 kb on + strand, within HP15_846 at 866.072 kb on - strand, within HP15_846 at 866.164 kb on + strand, within HP15_846 at 866.189 kb on + strand, within HP15_846 at 866.372 kb on + strand, within HP15_847 at 866.380 kb on - strand, within HP15_847 at 866.445 kb on + strand, within HP15_847 at 866.558 kb on - strand at 866.633 kb on - strand at 866.641 kb on + strand at 866.744 kb on + strand, within HP15_848 at 866.820 kb on + strand, within HP15_848 at 866.839 kb on - strand, within HP15_848 at 866.875 kb on - strand, within HP15_848 at 866.901 kb on - strand, within HP15_848 at 866.963 kb on + strand, within HP15_848 at 866.966 kb on - strand, within HP15_848 at 866.987 kb on - strand, within HP15_848 at 867.051 kb on + strand, within HP15_848 at 867.232 kb on - strand, within HP15_848 at 867.484 kb on + strand at 867.614 kb on + strand at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.639 kb on - strand, within HP15_849 at 867.720 kb on + strand, within HP15_849 at 867.720 kb on + strand, within HP15_849 at 867.722 kb on + strand, within HP15_849 at 867.762 kb on - strand, within HP15_849 at 867.780 kb on + strand, within HP15_849 at 867.882 kb on - strand, within HP15_849 at 868.073 kb on - strand, within HP15_849 at 868.285 kb on + strand at 868.365 kb on - strand at 868.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 865,591 + -0.2 865,630 + +0.2 865,655 + -1.9 865,655 + -1.6 865,655 + +0.1 865,704 - -0.2 865,833 + HP15_846 0.22 -2.3 866,072 - HP15_846 0.61 -0.4 866,164 + HP15_846 0.76 +0.2 866,189 + HP15_846 0.80 -0.7 866,372 + HP15_847 0.19 +0.2 866,380 - HP15_847 0.25 -1.4 866,445 + HP15_847 0.75 +0.3 866,558 - -0.2 866,633 - +0.9 866,641 + +0.5 866,744 + HP15_848 0.19 -0.4 866,820 + HP15_848 0.28 -0.2 866,839 - HP15_848 0.30 +0.0 866,875 - HP15_848 0.34 -0.5 866,901 - HP15_848 0.38 -2.1 866,963 + HP15_848 0.45 -1.5 866,966 - HP15_848 0.45 -0.6 866,987 - HP15_848 0.48 -1.1 867,051 + HP15_848 0.56 +0.3 867,232 - HP15_848 0.77 +0.4 867,484 + -0.5 867,614 + +0.2 867,631 + HP15_849 0.12 -0.0 867,631 + HP15_849 0.12 -0.3 867,631 + HP15_849 0.12 -0.3 867,631 + HP15_849 0.12 -0.2 867,639 - HP15_849 0.14 +0.1 867,720 + HP15_849 0.25 -1.1 867,720 + HP15_849 0.25 -0.7 867,722 + HP15_849 0.26 +0.6 867,762 - HP15_849 0.31 +0.0 867,780 + HP15_849 0.34 +0.2 867,882 - HP15_849 0.49 +0.3 868,073 - HP15_849 0.76 +0.5 868,285 + -0.3 868,365 - +0.5 868,382 + -0.0
Or see this region's nucleotide sequence