Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07290

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07280 and PGA1_c07290 are separated by 62 nucleotidesPGA1_c07290 and PGA1_c07300 are separated by 225 nucleotides PGA1_c07280: PGA1_c07280 - putative oxidoreduktase, at 749,306 to 750,463 _c07280 PGA1_c07290: PGA1_c07290 - transcriptional regulator, lacI family, at 750,526 to 751,527 _c07290 PGA1_c07300: PGA1_c07300 - Inositol transport system sugar-binding protein (from data), at 751,753 to 752,703 _c07300 Position (kb) 750 751 752Strain fitness (log2 ratio) -3 -2 -1 0 1at 749.532 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.537 kb on + strand, within PGA1_c07280at 749.540 kb on - strand, within PGA1_c07280at 749.542 kb on + strand, within PGA1_c07280at 749.549 kb on + strand, within PGA1_c07280at 749.607 kb on + strand, within PGA1_c07280at 749.640 kb on + strand, within PGA1_c07280at 749.640 kb on + strand, within PGA1_c07280at 749.683 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.689 kb on + strand, within PGA1_c07280at 749.692 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.697 kb on - strand, within PGA1_c07280at 749.710 kb on - strand, within PGA1_c07280at 749.743 kb on + strand, within PGA1_c07280at 749.743 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.869 kb on + strand, within PGA1_c07280at 749.877 kb on - strand, within PGA1_c07280at 749.909 kb on - strand, within PGA1_c07280at 749.920 kb on - strand, within PGA1_c07280at 749.922 kb on - strand, within PGA1_c07280at 749.944 kb on - strand, within PGA1_c07280at 749.961 kb on - strand, within PGA1_c07280at 749.968 kb on + strand, within PGA1_c07280at 749.975 kb on - strand, within PGA1_c07280at 750.003 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.046 kb on + strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.054 kb on - strand, within PGA1_c07280at 750.076 kb on - strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.083 kb on + strand, within PGA1_c07280at 750.098 kb on - strand, within PGA1_c07280at 750.098 kb on - strand, within PGA1_c07280at 750.124 kb on - strand, within PGA1_c07280at 750.126 kb on + strand, within PGA1_c07280at 750.161 kb on - strand, within PGA1_c07280at 750.210 kb on + strand, within PGA1_c07280at 750.218 kb on - strand, within PGA1_c07280at 750.280 kb on + strand, within PGA1_c07280at 750.357 kb on - strandat 750.422 kb on + strandat 750.426 kb on + strandat 750.474 kb on + strandat 750.564 kb on - strandat 750.564 kb on - strandat 750.617 kb on + strandat 750.617 kb on + strandat 750.617 kb on + strandat 750.617 kb on + strandat 750.617 kb on + strandat 750.620 kb on - strandat 750.622 kb on + strandat 750.625 kb on - strandat 750.638 kb on - strand, within PGA1_c07290at 750.659 kb on - strand, within PGA1_c07290at 750.663 kb on + strand, within PGA1_c07290at 750.671 kb on - strand, within PGA1_c07290at 750.679 kb on - strand, within PGA1_c07290at 750.686 kb on - strand, within PGA1_c07290at 750.752 kb on - strand, within PGA1_c07290at 750.904 kb on - strand, within PGA1_c07290at 750.929 kb on + strand, within PGA1_c07290at 750.929 kb on + strand, within PGA1_c07290at 750.997 kb on - strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.006 kb on + strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.014 kb on - strand, within PGA1_c07290at 751.016 kb on - strand, within PGA1_c07290at 751.016 kb on - strand, within PGA1_c07290at 751.018 kb on + strand, within PGA1_c07290at 751.069 kb on - strand, within PGA1_c07290at 751.160 kb on - strand, within PGA1_c07290at 751.165 kb on - strand, within PGA1_c07290at 751.286 kb on - strand, within PGA1_c07290at 751.302 kb on + strand, within PGA1_c07290at 751.372 kb on + strand, within PGA1_c07290at 751.388 kb on + strand, within PGA1_c07290at 751.390 kb on + strand, within PGA1_c07290at 751.426 kb on - strand, within PGA1_c07290at 751.481 kb on + strandat 751.488 kb on + strandat 751.525 kb on - strandat 751.561 kb on + strandat 751.561 kb on - strandat 751.570 kb on - strandat 751.570 kb on - strandat 751.587 kb on + strandat 751.592 kb on + strandat 751.712 kb on + strandat 751.712 kb on + strandat 751.712 kb on + strandat 751.812 kb on + strandat 751.904 kb on + strand, within PGA1_c07300at 751.934 kb on - strand, within PGA1_c07300at 751.939 kb on - strand, within PGA1_c07300at 751.947 kb on + strand, within PGA1_c07300at 752.003 kb on - strand, within PGA1_c07300at 752.040 kb on - strand, within PGA1_c07300at 752.045 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.074 kb on + strand, within PGA1_c07300at 752.095 kb on - strand, within PGA1_c07300at 752.117 kb on + strand, within PGA1_c07300at 752.122 kb on + strand, within PGA1_c07300at 752.148 kb on + strand, within PGA1_c07300at 752.156 kb on - strand, within PGA1_c07300at 752.171 kb on - strand, within PGA1_c07300at 752.190 kb on + strand, within PGA1_c07300at 752.239 kb on - strand, within PGA1_c07300at 752.277 kb on + strand, within PGA1_c07300at 752.327 kb on - strand, within PGA1_c07300at 752.390 kb on - strand, within PGA1_c07300at 752.413 kb on - strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.425 kb on + strand, within PGA1_c07300at 752.426 kb on + strand, within PGA1_c07300at 752.434 kb on - strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.483 kb on + strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.491 kb on - strand, within PGA1_c07300at 752.513 kb on - strand, within PGA1_c07300at 752.527 kb on + strand, within PGA1_c07300

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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749,532 + PGA1_c07280 0.20 -0.8
749,537 + PGA1_c07280 0.20 +0.1
749,537 + PGA1_c07280 0.20 -1.1
749,537 + PGA1_c07280 0.20 +0.6
749,537 + PGA1_c07280 0.20 +0.1
749,537 + PGA1_c07280 0.20 -0.6
749,540 - PGA1_c07280 0.20 +0.6
749,542 + PGA1_c07280 0.20 -0.2
749,549 + PGA1_c07280 0.21 +0.0
749,607 + PGA1_c07280 0.26 +0.2
749,640 + PGA1_c07280 0.29 -1.3
749,640 + PGA1_c07280 0.29 +0.6
749,683 + PGA1_c07280 0.33 +0.5
749,689 + PGA1_c07280 0.33 +0.2
749,689 + PGA1_c07280 0.33 -1.1
749,689 + PGA1_c07280 0.33 -1.1
749,689 + PGA1_c07280 0.33 +0.3
749,692 - PGA1_c07280 0.33 -0.3
749,697 - PGA1_c07280 0.34 +0.1
749,697 - PGA1_c07280 0.34 +0.5
749,697 - PGA1_c07280 0.34 -0.1
749,710 - PGA1_c07280 0.35 +0.3
749,743 + PGA1_c07280 0.38 +0.1
749,743 + PGA1_c07280 0.38 +0.3
749,869 + PGA1_c07280 0.49 -0.1
749,869 + PGA1_c07280 0.49 +0.1
749,869 + PGA1_c07280 0.49 +0.5
749,869 + PGA1_c07280 0.49 -1.3
749,877 - PGA1_c07280 0.49 -0.6
749,909 - PGA1_c07280 0.52 -0.2
749,920 - PGA1_c07280 0.53 -1.0
749,922 - PGA1_c07280 0.53 -0.4
749,944 - PGA1_c07280 0.55 +0.4
749,961 - PGA1_c07280 0.57 +1.3
749,968 + PGA1_c07280 0.57 -0.6
749,975 - PGA1_c07280 0.58 +0.4
750,003 + PGA1_c07280 0.60 +0.3
750,046 + PGA1_c07280 0.64 +0.7
750,046 + PGA1_c07280 0.64 -0.4
750,046 + PGA1_c07280 0.64 -0.3
750,046 + PGA1_c07280 0.64 -2.5
750,046 + PGA1_c07280 0.64 -1.2
750,046 + PGA1_c07280 0.64 -0.4
750,046 + PGA1_c07280 0.64 -0.3
750,046 + PGA1_c07280 0.64 +0.0
750,046 + PGA1_c07280 0.64 -0.2
750,054 - PGA1_c07280 0.65 +0.4
750,054 - PGA1_c07280 0.65 +0.8
750,054 - PGA1_c07280 0.65 -0.3
750,054 - PGA1_c07280 0.65 +0.1
750,054 - PGA1_c07280 0.65 -0.4
750,054 - PGA1_c07280 0.65 +0.8
750,054 - PGA1_c07280 0.65 +0.7
750,054 - PGA1_c07280 0.65 +0.7
750,076 - PGA1_c07280 0.66 -0.0
750,083 + PGA1_c07280 0.67 -1.5
750,083 + PGA1_c07280 0.67 -0.1
750,083 + PGA1_c07280 0.67 +0.6
750,098 - PGA1_c07280 0.68 +1.1
750,098 - PGA1_c07280 0.68 -0.8
750,124 - PGA1_c07280 0.71 -0.5
750,126 + PGA1_c07280 0.71 +0.7
750,161 - PGA1_c07280 0.74 -0.2
750,210 + PGA1_c07280 0.78 +0.9
750,218 - PGA1_c07280 0.79 -2.6
750,280 + PGA1_c07280 0.84 -0.6
750,357 - +0.2
750,422 + -0.9
750,426 + -0.2
750,474 + +0.4
750,564 - -0.8
750,564 - -1.1
750,617 + -0.8
750,617 + -0.7
750,617 + -1.6
750,617 + -0.8
750,617 + -2.0
750,620 - -1.6
750,622 + -2.7
750,625 - -1.4
750,638 - PGA1_c07290 0.11 -2.3
750,659 - PGA1_c07290 0.13 -2.6
750,663 + PGA1_c07290 0.14 -1.9
750,671 - PGA1_c07290 0.14 -2.0
750,679 - PGA1_c07290 0.15 -1.8
750,686 - PGA1_c07290 0.16 -2.3
750,752 - PGA1_c07290 0.23 -0.1
750,904 - PGA1_c07290 0.38 -1.7
750,929 + PGA1_c07290 0.40 -1.7
750,929 + PGA1_c07290 0.40 -2.1
750,997 - PGA1_c07290 0.47 -1.2
751,006 + PGA1_c07290 0.48 -2.8
751,006 + PGA1_c07290 0.48 -1.9
751,006 + PGA1_c07290 0.48 -1.9
751,006 + PGA1_c07290 0.48 -2.2
751,006 + PGA1_c07290 0.48 -0.8
751,006 + PGA1_c07290 0.48 -2.2
751,006 + PGA1_c07290 0.48 -1.3
751,006 + PGA1_c07290 0.48 -2.3
751,014 - PGA1_c07290 0.49 -1.9
751,014 - PGA1_c07290 0.49 -2.5
751,014 - PGA1_c07290 0.49 -1.5
751,014 - PGA1_c07290 0.49 -0.4
751,016 - PGA1_c07290 0.49 -2.1
751,016 - PGA1_c07290 0.49 -2.9
751,018 + PGA1_c07290 0.49 -1.2
751,069 - PGA1_c07290 0.54 -1.5
751,160 - PGA1_c07290 0.63 -3.6
751,165 - PGA1_c07290 0.64 -2.2
751,286 - PGA1_c07290 0.76 -3.0
751,302 + PGA1_c07290 0.77 -3.2
751,372 + PGA1_c07290 0.84 -1.5
751,388 + PGA1_c07290 0.86 -2.1
751,390 + PGA1_c07290 0.86 -3.1
751,426 - PGA1_c07290 0.90 -0.2
751,481 + -0.3
751,488 + -1.1
751,525 - +0.5
751,561 + -0.2
751,561 - +0.6
751,570 - +0.3
751,570 - -0.0
751,587 + -0.0
751,592 + -0.6
751,712 + +1.1
751,712 + +0.7
751,712 + +0.2
751,812 + -0.9
751,904 + PGA1_c07300 0.16 +0.3
751,934 - PGA1_c07300 0.19 +0.7
751,939 - PGA1_c07300 0.20 +0.9
751,947 + PGA1_c07300 0.20 +0.4
752,003 - PGA1_c07300 0.26 -1.1
752,040 - PGA1_c07300 0.30 +1.0
752,045 + PGA1_c07300 0.31 -0.3
752,074 + PGA1_c07300 0.34 +1.0
752,074 + PGA1_c07300 0.34 -0.1
752,074 + PGA1_c07300 0.34 +0.5
752,095 - PGA1_c07300 0.36 -0.4
752,117 + PGA1_c07300 0.38 -0.1
752,122 + PGA1_c07300 0.39 -0.8
752,148 + PGA1_c07300 0.42 +0.3
752,156 - PGA1_c07300 0.42 +0.5
752,171 - PGA1_c07300 0.44 +0.2
752,190 + PGA1_c07300 0.46 -0.2
752,239 - PGA1_c07300 0.51 +0.2
752,277 + PGA1_c07300 0.55 -1.1
752,327 - PGA1_c07300 0.60 -0.7
752,390 - PGA1_c07300 0.67 -0.2
752,413 - PGA1_c07300 0.69 -0.3
752,425 + PGA1_c07300 0.71 +0.9
752,425 + PGA1_c07300 0.71 -0.3
752,425 + PGA1_c07300 0.71 +0.6
752,426 + PGA1_c07300 0.71 -0.1
752,434 - PGA1_c07300 0.72 -0.1
752,483 + PGA1_c07300 0.77 +0.5
752,483 + PGA1_c07300 0.77 -0.7
752,483 + PGA1_c07300 0.77 -0.6
752,483 + PGA1_c07300 0.77 +0.1
752,483 + PGA1_c07300 0.77 +0.5
752,483 + PGA1_c07300 0.77 +0.1
752,491 - PGA1_c07300 0.78 -0.6
752,491 - PGA1_c07300 0.78 +0.4
752,491 - PGA1_c07300 0.78 -0.4
752,513 - PGA1_c07300 0.80 -0.7
752,527 + PGA1_c07300 0.81 +0.0

Or see this region's nucleotide sequence