Strain Fitness in Marinobacter adhaerens HP15 around HP15_529

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_528 and HP15_529 are separated by 396 nucleotidesHP15_529 and HP15_530 are separated by 49 nucleotides HP15_528: HP15_528 - multi-copper polyphenol oxidoreductase, laccase, at 543,406 to 544,161 _528 HP15_529: HP15_529 - protein disaggregation chaperone, at 544,558 to 547,134 _529 HP15_530: HP15_530 - conserved hypothetical protein, secreted, at 547,184 to 547,657 _530 Position (kb) 544 545 546 547 548Strain fitness (log2 ratio) -2 -1 0 1at 543.892 kb on + strand, within HP15_528at 543.910 kb on - strand, within HP15_528at 543.958 kb on + strand, within HP15_528at 543.958 kb on + strand, within HP15_528at 543.966 kb on - strand, within HP15_528at 544.069 kb on + strand, within HP15_528at 544.071 kb on + strand, within HP15_528at 544.072 kb on - strand, within HP15_528at 544.072 kb on - strand, within HP15_528at 544.079 kb on - strand, within HP15_528at 544.164 kb on - strandat 544.164 kb on - strandat 544.175 kb on - strandat 544.238 kb on - strandat 544.238 kb on - strandat 544.238 kb on - strandat 544.238 kb on - strandat 544.240 kb on - strandat 544.260 kb on + strandat 544.261 kb on + strandat 544.273 kb on - strandat 544.358 kb on + strandat 544.366 kb on - strandat 544.611 kb on + strandat 544.645 kb on + strandat 544.713 kb on + strandat 544.721 kb on - strandat 544.835 kb on - strand, within HP15_529at 544.864 kb on + strand, within HP15_529at 544.864 kb on + strand, within HP15_529at 544.864 kb on + strand, within HP15_529at 544.955 kb on + strand, within HP15_529at 545.203 kb on + strand, within HP15_529at 545.315 kb on - strand, within HP15_529at 545.339 kb on - strand, within HP15_529at 545.368 kb on + strand, within HP15_529at 545.430 kb on - strand, within HP15_529at 545.430 kb on - strand, within HP15_529at 545.456 kb on + strand, within HP15_529at 545.503 kb on - strand, within HP15_529at 545.594 kb on - strand, within HP15_529at 545.620 kb on - strand, within HP15_529at 545.620 kb on - strand, within HP15_529at 545.818 kb on - strand, within HP15_529at 545.990 kb on + strand, within HP15_529at 545.995 kb on + strand, within HP15_529at 546.005 kb on + strand, within HP15_529at 546.058 kb on + strand, within HP15_529at 546.148 kb on - strand, within HP15_529at 546.209 kb on - strand, within HP15_529at 546.297 kb on + strand, within HP15_529at 546.297 kb on + strand, within HP15_529at 546.305 kb on - strand, within HP15_529at 546.305 kb on - strand, within HP15_529at 546.305 kb on - strand, within HP15_529at 546.406 kb on + strand, within HP15_529at 546.513 kb on - strand, within HP15_529at 546.513 kb on - strand, within HP15_529at 546.541 kb on - strand, within HP15_529at 546.545 kb on + strand, within HP15_529at 546.605 kb on + strand, within HP15_529at 546.666 kb on + strand, within HP15_529at 546.666 kb on + strand, within HP15_529at 546.674 kb on - strand, within HP15_529at 546.674 kb on - strand, within HP15_529at 546.700 kb on + strand, within HP15_529at 546.707 kb on + strand, within HP15_529at 546.715 kb on - strand, within HP15_529at 546.715 kb on - strand, within HP15_529at 546.753 kb on + strand, within HP15_529at 546.950 kb on - strandat 547.052 kb on - strandat 547.100 kb on - strandat 547.161 kb on + strandat 547.240 kb on - strand, within HP15_530at 547.372 kb on + strand, within HP15_530at 547.540 kb on + strand, within HP15_530at 547.624 kb on + strandat 547.704 kb on + strandat 547.704 kb on + strandat 547.829 kb on + strandat 547.853 kb on + strandat 548.030 kb on + strandat 548.130 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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543,892 + HP15_528 0.64 +0.3
543,910 - HP15_528 0.67 +0.2
543,958 + HP15_528 0.73 +0.3
543,958 + HP15_528 0.73 +0.0
543,966 - HP15_528 0.74 +0.0
544,069 + HP15_528 0.88 +0.2
544,071 + HP15_528 0.88 +0.2
544,072 - HP15_528 0.88 -0.0
544,072 - HP15_528 0.88 -0.6
544,079 - HP15_528 0.89 -0.1
544,164 - +0.7
544,164 - -1.1
544,175 - -0.4
544,238 - -0.3
544,238 - +0.2
544,238 - +0.5
544,238 - -0.6
544,240 - -0.4
544,260 + +0.9
544,261 + -0.2
544,273 - -1.1
544,358 + -0.5
544,366 - -0.1
544,611 + +0.1
544,645 + -1.7
544,713 + -0.6
544,721 - +0.1
544,835 - HP15_529 0.11 -0.2
544,864 + HP15_529 0.12 -0.4
544,864 + HP15_529 0.12 -0.5
544,864 + HP15_529 0.12 -0.8
544,955 + HP15_529 0.15 +0.2
545,203 + HP15_529 0.25 +0.2
545,315 - HP15_529 0.29 -1.8
545,339 - HP15_529 0.30 -0.3
545,368 + HP15_529 0.31 -0.4
545,430 - HP15_529 0.34 -1.5
545,430 - HP15_529 0.34 -0.4
545,456 + HP15_529 0.35 +0.1
545,503 - HP15_529 0.37 +0.0
545,594 - HP15_529 0.40 -0.3
545,620 - HP15_529 0.41 -1.1
545,620 - HP15_529 0.41 -1.4
545,818 - HP15_529 0.49 -1.7
545,990 + HP15_529 0.56 +0.4
545,995 + HP15_529 0.56 -1.2
546,005 + HP15_529 0.56 -0.6
546,058 + HP15_529 0.58 -0.6
546,148 - HP15_529 0.62 -0.4
546,209 - HP15_529 0.64 +0.2
546,297 + HP15_529 0.67 +1.3
546,297 + HP15_529 0.67 +0.2
546,305 - HP15_529 0.68 -1.2
546,305 - HP15_529 0.68 -1.2
546,305 - HP15_529 0.68 -0.7
546,406 + HP15_529 0.72 -1.0
546,513 - HP15_529 0.76 -0.0
546,513 - HP15_529 0.76 -0.8
546,541 - HP15_529 0.77 -0.6
546,545 + HP15_529 0.77 -0.3
546,605 + HP15_529 0.79 -0.1
546,666 + HP15_529 0.82 +0.1
546,666 + HP15_529 0.82 -1.9
546,674 - HP15_529 0.82 -0.4
546,674 - HP15_529 0.82 -1.9
546,700 + HP15_529 0.83 -1.2
546,707 + HP15_529 0.83 -0.4
546,715 - HP15_529 0.84 -0.1
546,715 - HP15_529 0.84 -0.9
546,753 + HP15_529 0.85 -0.5
546,950 - -0.5
547,052 - -0.1
547,100 - +0.0
547,161 + -0.5
547,240 - HP15_530 0.12 -0.4
547,372 + HP15_530 0.40 +0.1
547,540 + HP15_530 0.75 +0.3
547,624 + -0.0
547,704 + +0.1
547,704 + +0.3
547,829 + +0.7
547,853 + +0.3
548,030 + +0.2
548,130 + -0.8

Or see this region's nucleotide sequence