Strain Fitness in Marinobacter adhaerens HP15 around HP15_5

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4 and HP15_5 are separated by 77 nucleotidesHP15_5 and HP15_6 are separated by 300 nucleotides HP15_4: HP15_4 - alcohol dehydrogenase zinc-binding domain protein, at 3,099 to 4,025 _4 HP15_5: HP15_5 - acetyl-CoA acetyltransferase, at 4,103 to 5,353 _5 HP15_6: HP15_6 - short-chain dehydrogenase/reductase SDR, at 5,654 to 6,310 _6 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 3.107 kb on - strandat 3.138 kb on + strandat 3.188 kb on + strandat 3.222 kb on + strand, within HP15_4at 3.266 kb on + strand, within HP15_4at 3.274 kb on - strand, within HP15_4at 3.274 kb on - strand, within HP15_4at 3.279 kb on - strand, within HP15_4at 3.350 kb on - strand, within HP15_4at 3.364 kb on + strand, within HP15_4at 3.405 kb on - strand, within HP15_4at 3.414 kb on + strand, within HP15_4at 3.601 kb on - strand, within HP15_4at 3.610 kb on - strand, within HP15_4at 3.635 kb on - strand, within HP15_4at 3.635 kb on - strand, within HP15_4at 3.671 kb on + strand, within HP15_4at 3.738 kb on + strand, within HP15_4at 3.747 kb on - strand, within HP15_4at 3.764 kb on - strand, within HP15_4at 3.766 kb on - strand, within HP15_4at 3.802 kb on - strand, within HP15_4at 3.853 kb on - strand, within HP15_4at 3.862 kb on + strand, within HP15_4at 3.865 kb on - strand, within HP15_4at 3.870 kb on - strand, within HP15_4at 3.873 kb on + strand, within HP15_4at 3.873 kb on + strand, within HP15_4at 3.875 kb on - strand, within HP15_4at 3.875 kb on - strand, within HP15_4at 3.881 kb on - strand, within HP15_4at 3.881 kb on - strand, within HP15_4at 3.917 kb on + strand, within HP15_4at 3.917 kb on + strand, within HP15_4at 3.925 kb on - strand, within HP15_4at 3.925 kb on - strand, within HP15_4at 3.936 kb on + strandat 3.967 kb on - strandat 3.994 kb on + strandat 4.052 kb on + strandat 4.064 kb on + strandat 4.072 kb on - strandat 4.072 kb on - strandat 4.072 kb on - strandat 4.072 kb on - strandat 4.092 kb on - strandat 4.108 kb on - strandat 4.130 kb on + strandat 4.130 kb on + strandat 4.130 kb on + strandat 4.167 kb on + strandat 4.338 kb on + strand, within HP15_5at 4.355 kb on + strand, within HP15_5at 4.416 kb on - strand, within HP15_5at 4.460 kb on - strand, within HP15_5at 4.460 kb on - strand, within HP15_5at 4.471 kb on + strand, within HP15_5at 4.471 kb on + strand, within HP15_5at 4.478 kb on + strand, within HP15_5at 4.555 kb on + strand, within HP15_5at 4.659 kb on + strand, within HP15_5at 4.659 kb on + strand, within HP15_5at 4.804 kb on - strand, within HP15_5at 4.881 kb on + strand, within HP15_5at 4.935 kb on - strand, within HP15_5at 5.070 kb on - strand, within HP15_5at 5.117 kb on + strand, within HP15_5at 5.123 kb on + strand, within HP15_5at 5.154 kb on - strand, within HP15_5at 5.181 kb on - strand, within HP15_5at 5.188 kb on - strand, within HP15_5at 5.276 kb on + strandat 5.348 kb on + strandat 5.376 kb on + strandat 5.429 kb on + strandat 5.437 kb on - strandat 5.440 kb on + strandat 5.448 kb on - strandat 5.448 kb on - strandat 5.448 kb on - strandat 5.512 kb on + strandat 5.521 kb on + strandat 5.545 kb on + strandat 5.673 kb on + strandat 5.714 kb on - strandat 5.770 kb on + strand, within HP15_6at 5.770 kb on + strand, within HP15_6at 5.800 kb on - strand, within HP15_6at 5.862 kb on + strand, within HP15_6at 5.933 kb on - strand, within HP15_6at 5.991 kb on + strand, within HP15_6at 5.999 kb on - strand, within HP15_6at 6.023 kb on - strand, within HP15_6at 6.045 kb on + strand, within HP15_6at 6.053 kb on - strand, within HP15_6at 6.053 kb on - strand, within HP15_6at 6.186 kb on - strand, within HP15_6at 6.212 kb on + strand, within HP15_6at 6.214 kb on - strand, within HP15_6at 6.214 kb on - strand, within HP15_6at 6.220 kb on - strand, within HP15_6at 6.220 kb on - strand, within HP15_6at 6.238 kb on + strand, within HP15_6at 6.249 kb on + strandat 6.278 kb on + strandat 6.286 kb on - strandat 6.286 kb on - strandat 6.286 kb on - strandat 6.338 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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3,107 - -0.2
3,138 + +0.5
3,188 + -0.9
3,222 + HP15_4 0.13 +0.2
3,266 + HP15_4 0.18 -0.7
3,274 - HP15_4 0.19 +0.2
3,274 - HP15_4 0.19 +0.9
3,279 - HP15_4 0.19 +0.7
3,350 - HP15_4 0.27 +0.2
3,364 + HP15_4 0.29 -0.1
3,405 - HP15_4 0.33 +0.2
3,414 + HP15_4 0.34 -0.7
3,601 - HP15_4 0.54 -0.7
3,610 - HP15_4 0.55 +0.1
3,635 - HP15_4 0.58 +0.9
3,635 - HP15_4 0.58 -0.2
3,671 + HP15_4 0.62 +0.2
3,738 + HP15_4 0.69 -0.9
3,747 - HP15_4 0.70 -0.6
3,764 - HP15_4 0.72 -0.2
3,766 - HP15_4 0.72 -2.3
3,802 - HP15_4 0.76 +0.2
3,853 - HP15_4 0.81 +0.0
3,862 + HP15_4 0.82 +0.2
3,865 - HP15_4 0.83 +0.9
3,870 - HP15_4 0.83 -0.3
3,873 + HP15_4 0.83 +0.1
3,873 + HP15_4 0.83 -0.2
3,875 - HP15_4 0.84 +0.5
3,875 - HP15_4 0.84 -1.9
3,881 - HP15_4 0.84 +1.0
3,881 - HP15_4 0.84 -0.9
3,917 + HP15_4 0.88 -0.1
3,917 + HP15_4 0.88 +0.4
3,925 - HP15_4 0.89 +0.8
3,925 - HP15_4 0.89 -0.3
3,936 + +0.6
3,967 - +0.8
3,994 + +0.1
4,052 + +0.0
4,064 + +0.3
4,072 - -0.9
4,072 - -1.2
4,072 - -0.2
4,072 - +0.1
4,092 - -0.4
4,108 - -0.0
4,130 + -0.3
4,130 + -0.1
4,130 + -0.2
4,167 + -0.1
4,338 + HP15_5 0.19 +0.0
4,355 + HP15_5 0.20 -0.0
4,416 - HP15_5 0.25 -1.6
4,460 - HP15_5 0.29 -1.1
4,460 - HP15_5 0.29 +0.1
4,471 + HP15_5 0.29 -0.3
4,471 + HP15_5 0.29 -0.3
4,478 + HP15_5 0.30 -0.1
4,555 + HP15_5 0.36 -0.3
4,659 + HP15_5 0.44 +1.3
4,659 + HP15_5 0.44 -0.5
4,804 - HP15_5 0.56 -0.2
4,881 + HP15_5 0.62 -1.1
4,935 - HP15_5 0.67 -0.2
5,070 - HP15_5 0.77 -0.5
5,117 + HP15_5 0.81 -0.2
5,123 + HP15_5 0.82 -0.4
5,154 - HP15_5 0.84 -1.4
5,181 - HP15_5 0.86 -0.6
5,188 - HP15_5 0.87 +0.9
5,276 + +0.2
5,348 + -0.4
5,376 + -0.5
5,429 + -0.4
5,437 - -0.2
5,440 + +1.3
5,448 - -0.0
5,448 - -0.1
5,448 - +2.3
5,512 + -0.7
5,521 + -0.3
5,545 + +0.7
5,673 + -0.2
5,714 - +0.0
5,770 + HP15_6 0.18 -1.0
5,770 + HP15_6 0.18 -0.2
5,800 - HP15_6 0.22 +1.0
5,862 + HP15_6 0.32 +0.5
5,933 - HP15_6 0.42 -0.6
5,991 + HP15_6 0.51 +0.3
5,999 - HP15_6 0.53 -0.0
6,023 - HP15_6 0.56 -1.0
6,045 + HP15_6 0.60 -0.1
6,053 - HP15_6 0.61 -0.8
6,053 - HP15_6 0.61 -0.6
6,186 - HP15_6 0.81 +0.4
6,212 + HP15_6 0.85 -0.1
6,214 - HP15_6 0.85 -2.2
6,214 - HP15_6 0.85 -0.1
6,220 - HP15_6 0.86 -0.4
6,220 - HP15_6 0.86 +0.3
6,238 + HP15_6 0.89 -0.3
6,249 + -0.4
6,278 + -0.9
6,286 - -0.0
6,286 - +0.7
6,286 - -0.2
6,338 + -0.4

Or see this region's nucleotide sequence