Strain Fitness in Marinobacter adhaerens HP15 around HP15_3848

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3845 and HP15_3846 are separated by 43 nucleotidesHP15_3846 and HP15_3847 overlap by 4 nucleotidesHP15_3847 and HP15_3848 overlap by 7 nucleotidesHP15_3848 and HP15_3849 are separated by 254 nucleotides HP15_3845: HP15_3845 - ADP-ribosylation/crystallin J1-like protein, at 4,071,539 to 4,072,711 _3845 HP15_3846: HP15_3846 - ethyl tert-butyl ether degradation EthD, at 4,072,755 to 4,073,066 _3846 HP15_3847: HP15_3847 - transmembrane transcriptional regulator (anti-Sigma-factor), at 4,073,063 to 4,073,329 _3847 HP15_3848: HP15_3848 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,073,323 to 4,073,940 _3848 HP15_3849: HP15_3849 - pyridine nucleotide-disulfide oxidoreductase dimerization region, at 4,074,195 to 4,076,384 _3849 Position (kb) 4073 4074Strain fitness (log2 ratio) -2 -1 0 1 2at 4072.424 kb on - strand, within HP15_3845at 4072.542 kb on - strand, within HP15_3845at 4072.588 kb on + strand, within HP15_3845at 4072.588 kb on + strand, within HP15_3845at 4072.607 kb on + strandat 4072.701 kb on + strandat 4072.706 kb on + strandat 4072.781 kb on - strandat 4072.781 kb on - strandat 4072.811 kb on - strand, within HP15_3846at 4072.889 kb on + strand, within HP15_3846at 4072.970 kb on + strand, within HP15_3846at 4073.015 kb on + strand, within HP15_3846at 4073.183 kb on + strand, within HP15_3847at 4073.266 kb on - strand, within HP15_3847at 4073.408 kb on - strand, within HP15_3848at 4073.408 kb on - strand, within HP15_3848at 4073.480 kb on - strand, within HP15_3848at 4073.494 kb on - strand, within HP15_3848at 4073.494 kb on - strand, within HP15_3848at 4073.496 kb on + strand, within HP15_3848at 4073.506 kb on - strand, within HP15_3848at 4073.627 kb on + strand, within HP15_3848at 4073.638 kb on - strand, within HP15_3848at 4073.666 kb on - strand, within HP15_3848at 4073.708 kb on - strand, within HP15_3848at 4073.766 kb on + strand, within HP15_3848at 4073.897 kb on + strandat 4074.084 kb on + strandat 4074.103 kb on - strandat 4074.281 kb on - strandat 4074.356 kb on - strandat 4074.427 kb on - strand, within HP15_3849at 4074.554 kb on - strand, within HP15_3849at 4074.567 kb on + strand, within HP15_3849at 4074.682 kb on + strand, within HP15_3849at 4074.682 kb on + strand, within HP15_3849at 4074.682 kb on + strand, within HP15_3849at 4074.766 kb on - strand, within HP15_3849at 4074.805 kb on - strand, within HP15_3849at 4074.878 kb on - strand, within HP15_3849at 4074.939 kb on + strand, within HP15_3849

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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4,072,424 - HP15_3845 0.75 +0.5
4,072,542 - HP15_3845 0.86 -0.6
4,072,588 + HP15_3845 0.89 +0.2
4,072,588 + HP15_3845 0.89 -0.0
4,072,607 + -1.7
4,072,701 + -0.8
4,072,706 + -0.3
4,072,781 - +0.3
4,072,781 - +0.6
4,072,811 - HP15_3846 0.18 +0.0
4,072,889 + HP15_3846 0.43 -0.0
4,072,970 + HP15_3846 0.69 -0.8
4,073,015 + HP15_3846 0.83 -2.1
4,073,183 + HP15_3847 0.45 -0.1
4,073,266 - HP15_3847 0.76 -1.0
4,073,408 - HP15_3848 0.14 +2.3
4,073,408 - HP15_3848 0.14 +0.9
4,073,480 - HP15_3848 0.25 +0.2
4,073,494 - HP15_3848 0.28 +0.8
4,073,494 - HP15_3848 0.28 -0.2
4,073,496 + HP15_3848 0.28 +0.1
4,073,506 - HP15_3848 0.30 -0.4
4,073,627 + HP15_3848 0.49 +0.7
4,073,638 - HP15_3848 0.51 -0.2
4,073,666 - HP15_3848 0.56 +0.2
4,073,708 - HP15_3848 0.62 +0.8
4,073,766 + HP15_3848 0.72 +2.1
4,073,897 + +0.4
4,074,084 + -0.4
4,074,103 - -0.4
4,074,281 - +0.2
4,074,356 - -0.0
4,074,427 - HP15_3849 0.11 +0.8
4,074,554 - HP15_3849 0.16 -1.0
4,074,567 + HP15_3849 0.17 +0.0
4,074,682 + HP15_3849 0.22 -1.4
4,074,682 + HP15_3849 0.22 -0.5
4,074,682 + HP15_3849 0.22 +0.8
4,074,766 - HP15_3849 0.26 +0.9
4,074,805 - HP15_3849 0.28 -0.5
4,074,878 - HP15_3849 0.31 -0.5
4,074,939 + HP15_3849 0.34 +0.8

Or see this region's nucleotide sequence