Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3717 and HP15_3718 are separated by 83 nucleotides HP15_3718 and HP15_3719 are separated by 5 nucleotides HP15_3719 and HP15_3720 are separated by 105 nucleotides
HP15_3717: HP15_3717 - conserved hypothetical protein, at 3,932,188 to 3,932,619
_3717
HP15_3718: HP15_3718 - conserved hypothetical protein, secreted, at 3,932,703 to 3,933,143
_3718
HP15_3719: HP15_3719 - short-chain dehydrogenase/reductase SDR, at 3,933,149 to 3,933,856
_3719
HP15_3720: HP15_3720 - DNA damage response nuclease (from data) , at 3,933,962 to 3,935,671
_3720
Position (kb)
3933
3934 Strain fitness (log2 ratio)
-2
-1
0
1 at 3932.193 kb on - strand at 3932.195 kb on + strand at 3932.195 kb on + strand at 3932.212 kb on + strand at 3932.241 kb on - strand, within HP15_3717 at 3932.345 kb on - strand, within HP15_3717 at 3932.378 kb on + strand, within HP15_3717 at 3932.427 kb on + strand, within HP15_3717 at 3932.521 kb on + strand, within HP15_3717 at 3932.524 kb on - strand, within HP15_3717 at 3932.529 kb on - strand, within HP15_3717 at 3932.572 kb on - strand, within HP15_3717 at 3932.652 kb on + strand at 3932.652 kb on + strand at 3932.660 kb on - strand at 3932.660 kb on - strand at 3932.660 kb on - strand at 3932.687 kb on + strand at 3932.772 kb on + strand, within HP15_3718 at 3932.824 kb on + strand, within HP15_3718 at 3932.824 kb on + strand, within HP15_3718 at 3932.832 kb on - strand, within HP15_3718 at 3932.832 kb on - strand, within HP15_3718 at 3932.868 kb on + strand, within HP15_3718 at 3932.868 kb on + strand, within HP15_3718 at 3932.873 kb on + strand, within HP15_3718 at 3932.873 kb on + strand, within HP15_3718 at 3932.876 kb on - strand, within HP15_3718 at 3932.881 kb on - strand, within HP15_3718 at 3932.881 kb on - strand, within HP15_3718 at 3932.897 kb on - strand, within HP15_3718 at 3932.919 kb on + strand, within HP15_3718 at 3932.927 kb on - strand, within HP15_3718 at 3932.963 kb on + strand, within HP15_3718 at 3932.983 kb on + strand, within HP15_3718 at 3933.016 kb on + strand, within HP15_3718 at 3933.083 kb on + strand, within HP15_3718 at 3933.390 kb on - strand, within HP15_3719 at 3933.391 kb on - strand, within HP15_3719 at 3933.392 kb on + strand, within HP15_3719 at 3933.397 kb on + strand, within HP15_3719 at 3933.445 kb on - strand, within HP15_3719 at 3933.466 kb on + strand, within HP15_3719 at 3933.488 kb on + strand, within HP15_3719 at 3933.712 kb on - strand, within HP15_3719 at 3933.774 kb on + strand, within HP15_3719 at 3933.785 kb on + strand, within HP15_3719 at 3933.789 kb on + strand at 3933.797 kb on - strand at 3933.806 kb on + strand at 3933.814 kb on - strand at 3933.873 kb on - strand at 3933.966 kb on - strand at 3933.979 kb on + strand at 3933.991 kb on + strand at 3933.992 kb on - strand at 3933.997 kb on - strand at 3933.997 kb on - strand at 3934.058 kb on + strand at 3934.058 kb on + strand at 3934.066 kb on - strand at 3934.218 kb on - strand, within HP15_3720 at 3934.272 kb on + strand, within HP15_3720 at 3934.274 kb on + strand, within HP15_3720 at 3934.284 kb on + strand, within HP15_3720 at 3934.297 kb on + strand, within HP15_3720 at 3934.365 kb on + strand, within HP15_3720 at 3934.428 kb on - strand, within HP15_3720 at 3934.429 kb on - strand, within HP15_3720 at 3934.461 kb on - strand, within HP15_3720 at 3934.551 kb on + strand, within HP15_3720 at 3934.556 kb on + strand, within HP15_3720 at 3934.562 kb on + strand, within HP15_3720 at 3934.587 kb on + strand, within HP15_3720 at 3934.632 kb on + strand, within HP15_3720 at 3934.655 kb on + strand, within HP15_3720 at 3934.670 kb on + strand, within HP15_3720 at 3934.673 kb on - strand, within HP15_3720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,932,193 - +0.0 3,932,195 + -0.1 3,932,195 + -0.3 3,932,212 + +0.7 3,932,241 - HP15_3717 0.12 +0.2 3,932,345 - HP15_3717 0.36 +0.3 3,932,378 + HP15_3717 0.44 +0.9 3,932,427 + HP15_3717 0.55 -0.1 3,932,521 + HP15_3717 0.77 -0.2 3,932,524 - HP15_3717 0.78 -0.2 3,932,529 - HP15_3717 0.79 +0.6 3,932,572 - HP15_3717 0.89 -0.6 3,932,652 + -0.2 3,932,652 + +0.8 3,932,660 - -0.7 3,932,660 - -1.0 3,932,660 - -0.3 3,932,687 + +0.6 3,932,772 + HP15_3718 0.16 +0.2 3,932,824 + HP15_3718 0.27 -0.0 3,932,824 + HP15_3718 0.27 +0.9 3,932,832 - HP15_3718 0.29 -1.0 3,932,832 - HP15_3718 0.29 -1.8 3,932,868 + HP15_3718 0.37 -0.2 3,932,868 + HP15_3718 0.37 -0.6 3,932,873 + HP15_3718 0.39 +0.4 3,932,873 + HP15_3718 0.39 +0.2 3,932,876 - HP15_3718 0.39 +1.2 3,932,881 - HP15_3718 0.40 -1.0 3,932,881 - HP15_3718 0.40 -0.9 3,932,897 - HP15_3718 0.44 +0.6 3,932,919 + HP15_3718 0.49 +0.5 3,932,927 - HP15_3718 0.51 +0.1 3,932,963 + HP15_3718 0.59 -0.1 3,932,983 + HP15_3718 0.63 +0.3 3,933,016 + HP15_3718 0.71 -0.6 3,933,083 + HP15_3718 0.86 -0.7 3,933,390 - HP15_3719 0.34 -0.7 3,933,391 - HP15_3719 0.34 -1.0 3,933,392 + HP15_3719 0.34 -0.3 3,933,397 + HP15_3719 0.35 +0.2 3,933,445 - HP15_3719 0.42 -0.3 3,933,466 + HP15_3719 0.45 -1.0 3,933,488 + HP15_3719 0.48 -0.7 3,933,712 - HP15_3719 0.80 -0.2 3,933,774 + HP15_3719 0.88 +0.0 3,933,785 + HP15_3719 0.90 -0.2 3,933,789 + +0.2 3,933,797 - -0.4 3,933,806 + -0.2 3,933,814 - -0.2 3,933,873 - -0.6 3,933,966 - -0.2 3,933,979 + -0.2 3,933,991 + +0.1 3,933,992 - +0.4 3,933,997 - -0.7 3,933,997 - -0.6 3,934,058 + -0.5 3,934,058 + +0.6 3,934,066 - +0.3 3,934,218 - HP15_3720 0.15 +0.3 3,934,272 + HP15_3720 0.18 -0.7 3,934,274 + HP15_3720 0.18 -0.0 3,934,284 + HP15_3720 0.19 -1.0 3,934,297 + HP15_3720 0.20 +0.7 3,934,365 + HP15_3720 0.24 -0.1 3,934,428 - HP15_3720 0.27 -0.0 3,934,429 - HP15_3720 0.27 -0.3 3,934,461 - HP15_3720 0.29 -0.0 3,934,551 + HP15_3720 0.34 -0.4 3,934,556 + HP15_3720 0.35 -0.1 3,934,562 + HP15_3720 0.35 -0.7 3,934,587 + HP15_3720 0.37 -0.0 3,934,632 + HP15_3720 0.39 +0.8 3,934,655 + HP15_3720 0.41 +0.1 3,934,670 + HP15_3720 0.41 -0.0 3,934,673 - HP15_3720 0.42 -0.0
Or see this region's nucleotide sequence