Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00130 and PGA1_262p00140 are separated by 213 nucleotides PGA1_262p00140 and PGA1_262p00150 are separated by 100 nucleotides
PGA1_262p00130: PGA1_262p00130 - hypothetical protein, at 15,451 to 16,515
_262p00130
PGA1_262p00140: PGA1_262p00140 - putative amino acid binding protein, at 16,729 to 17,889
_262p00140
PGA1_262p00150: PGA1_262p00150 - methyl-accepting chemotaxis protein, at 17,990 to 20,662
_262p00150
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1
2 at 15.767 kb on - strand, within PGA1_262p00130 at 15.871 kb on - strand, within PGA1_262p00130 at 16.102 kb on + strand, within PGA1_262p00130 at 16.137 kb on + strand, within PGA1_262p00130 at 16.253 kb on + strand, within PGA1_262p00130 at 16.280 kb on + strand, within PGA1_262p00130 at 16.385 kb on + strand, within PGA1_262p00130 at 16.423 kb on + strand at 16.483 kb on - strand at 16.483 kb on - strand at 16.524 kb on + strand at 16.566 kb on - strand at 16.587 kb on + strand at 16.588 kb on + strand at 16.677 kb on + strand at 16.707 kb on - strand at 16.767 kb on - strand at 16.789 kb on - strand at 16.798 kb on - strand at 16.813 kb on + strand at 16.897 kb on + strand, within PGA1_262p00140 at 16.925 kb on + strand, within PGA1_262p00140 at 16.927 kb on + strand, within PGA1_262p00140 at 16.985 kb on - strand, within PGA1_262p00140 at 17.034 kb on + strand, within PGA1_262p00140 at 17.090 kb on - strand, within PGA1_262p00140 at 17.261 kb on - strand, within PGA1_262p00140 at 17.270 kb on + strand, within PGA1_262p00140 at 17.288 kb on - strand, within PGA1_262p00140 at 17.412 kb on + strand, within PGA1_262p00140 at 17.414 kb on - strand, within PGA1_262p00140 at 17.511 kb on - strand, within PGA1_262p00140 at 17.539 kb on - strand, within PGA1_262p00140 at 17.539 kb on - strand, within PGA1_262p00140 at 17.665 kb on - strand, within PGA1_262p00140 at 17.716 kb on + strand, within PGA1_262p00140 at 17.716 kb on + strand, within PGA1_262p00140 at 17.724 kb on - strand, within PGA1_262p00140 at 17.777 kb on + strand at 18.087 kb on + strand at 18.120 kb on + strand at 18.310 kb on - strand, within PGA1_262p00150 at 18.371 kb on - strand, within PGA1_262p00150 at 18.471 kb on + strand, within PGA1_262p00150 at 18.521 kb on - strand, within PGA1_262p00150 at 18.567 kb on + strand, within PGA1_262p00150 at 18.676 kb on - strand, within PGA1_262p00150 at 18.768 kb on + strand, within PGA1_262p00150 at 18.844 kb on - strand, within PGA1_262p00150 at 18.883 kb on - strand, within PGA1_262p00150 at 18.888 kb on + strand, within PGA1_262p00150
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 15,767 - PGA1_262p00130 0.30 +0.5 15,871 - PGA1_262p00130 0.39 +1.4 16,102 + PGA1_262p00130 0.61 +0.8 16,137 + PGA1_262p00130 0.64 +0.6 16,253 + PGA1_262p00130 0.75 +2.3 16,280 + PGA1_262p00130 0.78 -0.6 16,385 + PGA1_262p00130 0.88 -0.1 16,423 + -0.3 16,483 - +0.1 16,483 - -0.5 16,524 + -1.8 16,566 - -0.2 16,587 + +1.3 16,588 + -0.1 16,677 + +0.7 16,707 - -1.2 16,767 - -0.1 16,789 - -0.6 16,798 - +0.7 16,813 + -0.2 16,897 + PGA1_262p00140 0.14 +0.6 16,925 + PGA1_262p00140 0.17 -0.0 16,927 + PGA1_262p00140 0.17 +0.9 16,985 - PGA1_262p00140 0.22 +0.1 17,034 + PGA1_262p00140 0.26 +0.4 17,090 - PGA1_262p00140 0.31 -0.3 17,261 - PGA1_262p00140 0.46 -0.1 17,270 + PGA1_262p00140 0.47 +1.2 17,288 - PGA1_262p00140 0.48 -1.8 17,412 + PGA1_262p00140 0.59 +0.1 17,414 - PGA1_262p00140 0.59 +0.2 17,511 - PGA1_262p00140 0.67 +0.4 17,539 - PGA1_262p00140 0.70 +0.7 17,539 - PGA1_262p00140 0.70 -0.8 17,665 - PGA1_262p00140 0.81 -0.0 17,716 + PGA1_262p00140 0.85 +0.6 17,716 + PGA1_262p00140 0.85 -0.3 17,724 - PGA1_262p00140 0.86 +0.7 17,777 + +0.5 18,087 + -0.9 18,120 + -0.6 18,310 - PGA1_262p00150 0.12 -0.4 18,371 - PGA1_262p00150 0.14 -0.6 18,471 + PGA1_262p00150 0.18 -0.2 18,521 - PGA1_262p00150 0.20 +0.5 18,567 + PGA1_262p00150 0.22 +0.9 18,676 - PGA1_262p00150 0.26 +0.2 18,768 + PGA1_262p00150 0.29 +1.0 18,844 - PGA1_262p00150 0.32 -0.3 18,883 - PGA1_262p00150 0.33 +0.0 18,888 + PGA1_262p00150 0.34 +1.6
Or see this region's nucleotide sequence