Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3518 and HP15_3519 overlap by 1 nucleotides HP15_3519 and HP15_3520 are separated by 11 nucleotides HP15_3520 and HP15_3521 are separated by 73 nucleotides
HP15_3518: HP15_3518 - CheA signal transduction histidine kinase, at 3,700,534 to 3,708,128
_3518
HP15_3519: HP15_3519 - CheB methylesterase, at 3,708,128 to 3,709,180
_3519
HP15_3520: HP15_3520 - protein containing CheW-like domain, at 3,709,192 to 3,709,653
_3520
HP15_3521: HP15_3521 - zinc uptake regulation protein, at 3,709,727 to 3,710,218
_3521
Position (kb)
3708
3709
3710 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3707.448 kb on + strand at 3707.526 kb on - strand at 3707.528 kb on + strand at 3707.536 kb on - strand at 3707.536 kb on - strand at 3707.536 kb on - strand at 3707.597 kb on + strand at 3707.659 kb on + strand at 3707.738 kb on - strand at 3707.762 kb on - strand at 3707.833 kb on - strand at 3707.961 kb on - strand at 3708.034 kb on - strand at 3708.041 kb on + strand at 3708.049 kb on - strand at 3708.156 kb on - strand at 3708.221 kb on - strand at 3708.441 kb on + strand, within HP15_3519 at 3708.470 kb on + strand, within HP15_3519 at 3708.506 kb on - strand, within HP15_3519 at 3708.563 kb on - strand, within HP15_3519 at 3708.634 kb on - strand, within HP15_3519 at 3708.788 kb on - strand, within HP15_3519 at 3708.873 kb on + strand, within HP15_3519 at 3708.918 kb on + strand, within HP15_3519 at 3708.926 kb on - strand, within HP15_3519 at 3709.022 kb on - strand, within HP15_3519 at 3709.203 kb on + strand at 3709.257 kb on + strand, within HP15_3520 at 3709.499 kb on + strand, within HP15_3520 at 3709.932 kb on - strand, within HP15_3521 at 3710.097 kb on + strand, within HP15_3521 at 3710.097 kb on + strand, within HP15_3521 at 3710.105 kb on - strand, within HP15_3521 at 3710.105 kb on - strand, within HP15_3521 at 3710.109 kb on + strand, within HP15_3521
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 3,707,448 + +0.6 3,707,526 - +0.4 3,707,528 + +0.4 3,707,536 - +0.2 3,707,536 - +0.3 3,707,536 - -0.3 3,707,597 + +0.7 3,707,659 + -0.5 3,707,738 - -1.1 3,707,762 - -0.5 3,707,833 - +0.3 3,707,961 - -0.0 3,708,034 - +0.8 3,708,041 + +0.7 3,708,049 - -1.2 3,708,156 - -0.1 3,708,221 - -0.6 3,708,441 + HP15_3519 0.30 -1.8 3,708,470 + HP15_3519 0.32 -1.3 3,708,506 - HP15_3519 0.36 -0.3 3,708,563 - HP15_3519 0.41 +0.7 3,708,634 - HP15_3519 0.48 -2.5 3,708,788 - HP15_3519 0.63 -1.5 3,708,873 + HP15_3519 0.71 -0.6 3,708,918 + HP15_3519 0.75 -0.3 3,708,926 - HP15_3519 0.76 -0.7 3,709,022 - HP15_3519 0.85 +0.0 3,709,203 + -0.1 3,709,257 + HP15_3520 0.14 -0.5 3,709,499 + HP15_3520 0.66 +0.5 3,709,932 - HP15_3521 0.42 -1.7 3,710,097 + HP15_3521 0.75 -3.9 3,710,097 + HP15_3521 0.75 -2.3 3,710,105 - HP15_3521 0.77 -4.3 3,710,105 - HP15_3521 0.77 -4.6 3,710,109 + HP15_3521 0.78 -5.2
Or see this region's nucleotide sequence