Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_348 and HP15_349 overlap by 4 nucleotides HP15_349 and HP15_350 are separated by 146 nucleotides HP15_350 and HP15_351 are separated by 3 nucleotides
HP15_348: HP15_348 - thiamine-phosphate pyrophosphorylase, at 343,342 to 344,001
_348
HP15_349: HP15_349 - phosphomethylpyrimidine kinase, at 343,998 to 344,651
_349
HP15_350: HP15_350 - conserved hypothetical protein CHP00701, at 344,798 to 345,220
_350
HP15_351: HP15_351 - Cl-channel, voltage-gated family protein, at 345,224 to 346,999
_351
Position (kb) 344
345
346 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 345.361 kb on + strand at 345.367 kb on + strand at 345.404 kb on + strand, within HP15_351 at 345.512 kb on - strand, within HP15_351 at 345.580 kb on - strand, within HP15_351 at 345.751 kb on + strand, within HP15_351 at 345.751 kb on - strand, within HP15_351 at 345.759 kb on - strand, within HP15_351 at 345.809 kb on - strand, within HP15_351 at 345.847 kb on + strand, within HP15_351 at 345.865 kb on + strand, within HP15_351 at 345.975 kb on + strand, within HP15_351 at 346.030 kb on + strand, within HP15_351 at 346.105 kb on - strand, within HP15_351 at 346.214 kb on - strand, within HP15_351 at 346.219 kb on + strand, within HP15_351
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 345,361 + -1.1 345,367 + +0.9 345,404 + HP15_351 0.10 -0.9 345,512 - HP15_351 0.16 -0.8 345,580 - HP15_351 0.20 -1.1 345,751 + HP15_351 0.30 -0.4 345,751 - HP15_351 0.30 -1.1 345,759 - HP15_351 0.30 -0.4 345,809 - HP15_351 0.33 -1.4 345,847 + HP15_351 0.35 +0.9 345,865 + HP15_351 0.36 -0.7 345,975 + HP15_351 0.42 -1.6 346,030 + HP15_351 0.45 -3.7 346,105 - HP15_351 0.50 -2.0 346,214 - HP15_351 0.56 -0.6 346,219 + HP15_351 0.56 -1.0
Or see this region's nucleotide sequence