Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03430

Experiment: m.b. Gentamicin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03420 and PGA1_c03430 overlap by 8 nucleotidesPGA1_c03430 and PGA1_c03440 are separated by 119 nucleotidesPGA1_c03440 and PGA1_c03450 are separated by 22 nucleotides PGA1_c03420: PGA1_c03420 - putative C-5 sterol desaturase, at 328,918 to 329,847 _c03420 PGA1_c03430: PGA1_c03430 - hypothetical protein, at 329,840 to 330,280 _c03430 PGA1_c03440: PGA1_c03440 - disulfide interchange protein tlpA-like protein, at 330,400 to 330,987 _c03440 PGA1_c03450: PGA1_c03450 - argininosuccinate lyase ArgH, at 331,010 to 332,380 _c03450 Position (kb) 329 330 331Strain fitness (log2 ratio) -3 -2 -1 0 1at 328.841 kb on + strandat 328.841 kb on + strandat 328.841 kb on + strandat 328.841 kb on + strandat 328.849 kb on - strandat 328.849 kb on - strandat 328.915 kb on + strandat 328.916 kb on - strandat 328.918 kb on - strandat 328.918 kb on - strandat 328.918 kb on - strandat 328.918 kb on - strandat 328.921 kb on + strandat 328.923 kb on - strandat 328.923 kb on - strandat 328.923 kb on - strandat 328.923 kb on - strandat 328.923 kb on - strandat 328.942 kb on - strandat 328.944 kb on + strandat 328.949 kb on + strandat 328.952 kb on - strandat 328.980 kb on + strandat 328.980 kb on + strandat 328.988 kb on - strandat 329.011 kb on + strand, within PGA1_c03420at 329.099 kb on - strand, within PGA1_c03420at 329.115 kb on + strand, within PGA1_c03420at 329.135 kb on - strand, within PGA1_c03420at 329.139 kb on + strand, within PGA1_c03420at 329.143 kb on - strand, within PGA1_c03420at 329.154 kb on - strand, within PGA1_c03420at 329.169 kb on - strand, within PGA1_c03420at 329.169 kb on - strand, within PGA1_c03420at 329.203 kb on - strand, within PGA1_c03420at 329.217 kb on + strand, within PGA1_c03420at 329.217 kb on + strand, within PGA1_c03420at 329.269 kb on + strand, within PGA1_c03420at 329.274 kb on + strand, within PGA1_c03420at 329.274 kb on + strand, within PGA1_c03420at 329.274 kb on + strand, within PGA1_c03420at 329.284 kb on + strand, within PGA1_c03420at 329.295 kb on + strand, within PGA1_c03420at 329.295 kb on + strand, within PGA1_c03420at 329.303 kb on - strand, within PGA1_c03420at 329.305 kb on + strand, within PGA1_c03420at 329.324 kb on + strand, within PGA1_c03420at 329.344 kb on - strand, within PGA1_c03420at 329.358 kb on - strand, within PGA1_c03420at 329.388 kb on + strand, within PGA1_c03420at 329.404 kb on + strand, within PGA1_c03420at 329.412 kb on - strand, within PGA1_c03420at 329.412 kb on - strand, within PGA1_c03420at 329.441 kb on - strand, within PGA1_c03420at 329.447 kb on + strand, within PGA1_c03420at 329.514 kb on + strand, within PGA1_c03420at 329.520 kb on - strand, within PGA1_c03420at 329.522 kb on + strand, within PGA1_c03420at 329.547 kb on + strand, within PGA1_c03420at 329.552 kb on + strand, within PGA1_c03420at 329.558 kb on - strand, within PGA1_c03420at 329.558 kb on - strand, within PGA1_c03420at 329.606 kb on + strand, within PGA1_c03420at 329.629 kb on - strand, within PGA1_c03420at 329.682 kb on + strand, within PGA1_c03420at 329.714 kb on - strand, within PGA1_c03420at 329.721 kb on - strand, within PGA1_c03420at 329.833 kb on - strandat 329.857 kb on - strandat 329.871 kb on - strandat 329.871 kb on - strandat 329.871 kb on - strandat 329.882 kb on - strandat 329.884 kb on + strand, within PGA1_c03430at 329.892 kb on - strand, within PGA1_c03430at 329.921 kb on + strand, within PGA1_c03430at 329.994 kb on + strand, within PGA1_c03430at 329.994 kb on + strand, within PGA1_c03430at 330.007 kb on + strand, within PGA1_c03430at 330.020 kb on - strand, within PGA1_c03430at 330.022 kb on + strand, within PGA1_c03430at 330.030 kb on - strand, within PGA1_c03430at 330.057 kb on + strand, within PGA1_c03430at 330.065 kb on - strand, within PGA1_c03430at 330.065 kb on - strand, within PGA1_c03430at 330.067 kb on + strand, within PGA1_c03430at 330.082 kb on - strand, within PGA1_c03430at 330.094 kb on + strand, within PGA1_c03430at 330.097 kb on - strand, within PGA1_c03430at 330.103 kb on + strand, within PGA1_c03430at 330.155 kb on + strand, within PGA1_c03430at 330.171 kb on - strand, within PGA1_c03430at 330.172 kb on - strand, within PGA1_c03430at 330.196 kb on + strand, within PGA1_c03430at 330.198 kb on - strand, within PGA1_c03430at 330.250 kb on + strandat 330.287 kb on + strandat 330.332 kb on - strandat 330.333 kb on - strandat 330.367 kb on + strandat 330.375 kb on - strandat 330.385 kb on + strandat 330.393 kb on - strandat 330.402 kb on + strandat 330.402 kb on + strandat 330.405 kb on - strandat 330.801 kb on + strand, within PGA1_c03440at 330.969 kb on - strandat 330.982 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml
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328,841 + +0.3
328,841 + -1.3
328,841 + -1.3
328,841 + +0.5
328,849 - -0.3
328,849 - -0.8
328,915 + +0.9
328,916 - -0.9
328,918 - -0.1
328,918 - -1.4
328,918 - +0.3
328,918 - +0.1
328,921 + +0.2
328,923 - +0.2
328,923 - +0.6
328,923 - +0.6
328,923 - +0.1
328,923 - -0.4
328,942 - -0.5
328,944 + +0.4
328,949 + -0.1
328,952 - -0.0
328,980 + -0.4
328,980 + -0.6
328,988 - +0.2
329,011 + PGA1_c03420 0.10 -1.5
329,099 - PGA1_c03420 0.19 +0.4
329,115 + PGA1_c03420 0.21 +0.2
329,135 - PGA1_c03420 0.23 -0.2
329,139 + PGA1_c03420 0.24 +0.6
329,143 - PGA1_c03420 0.24 +0.1
329,154 - PGA1_c03420 0.25 -0.2
329,169 - PGA1_c03420 0.27 +0.4
329,169 - PGA1_c03420 0.27 -1.1
329,203 - PGA1_c03420 0.31 +0.1
329,217 + PGA1_c03420 0.32 +0.2
329,217 + PGA1_c03420 0.32 -2.8
329,269 + PGA1_c03420 0.38 +0.7
329,274 + PGA1_c03420 0.38 +0.0
329,274 + PGA1_c03420 0.38 +0.2
329,274 + PGA1_c03420 0.38 +0.5
329,284 + PGA1_c03420 0.39 +0.3
329,295 + PGA1_c03420 0.41 -0.4
329,295 + PGA1_c03420 0.41 -0.3
329,303 - PGA1_c03420 0.41 -1.1
329,305 + PGA1_c03420 0.42 -0.9
329,324 + PGA1_c03420 0.44 -1.0
329,344 - PGA1_c03420 0.46 -0.2
329,358 - PGA1_c03420 0.47 +0.3
329,388 + PGA1_c03420 0.51 +1.0
329,404 + PGA1_c03420 0.52 -0.0
329,412 - PGA1_c03420 0.53 -0.4
329,412 - PGA1_c03420 0.53 +0.4
329,441 - PGA1_c03420 0.56 +0.2
329,447 + PGA1_c03420 0.57 +0.2
329,514 + PGA1_c03420 0.64 +0.5
329,520 - PGA1_c03420 0.65 +0.4
329,522 + PGA1_c03420 0.65 +0.6
329,547 + PGA1_c03420 0.68 +0.5
329,552 + PGA1_c03420 0.68 +0.0
329,558 - PGA1_c03420 0.69 -0.9
329,558 - PGA1_c03420 0.69 -0.3
329,606 + PGA1_c03420 0.74 -0.5
329,629 - PGA1_c03420 0.76 +0.6
329,682 + PGA1_c03420 0.82 +0.9
329,714 - PGA1_c03420 0.86 +0.0
329,721 - PGA1_c03420 0.86 -0.2
329,833 - -2.2
329,857 - -0.1
329,871 - -0.4
329,871 - +0.7
329,871 - +1.5
329,882 - +0.6
329,884 + PGA1_c03430 0.10 -0.0
329,892 - PGA1_c03430 0.12 -0.3
329,921 + PGA1_c03430 0.18 +0.3
329,994 + PGA1_c03430 0.35 +0.2
329,994 + PGA1_c03430 0.35 +0.2
330,007 + PGA1_c03430 0.38 +1.2
330,020 - PGA1_c03430 0.41 +0.1
330,022 + PGA1_c03430 0.41 -1.0
330,030 - PGA1_c03430 0.43 -1.1
330,057 + PGA1_c03430 0.49 -0.6
330,065 - PGA1_c03430 0.51 -0.3
330,065 - PGA1_c03430 0.51 -0.1
330,067 + PGA1_c03430 0.51 -0.9
330,082 - PGA1_c03430 0.55 +0.6
330,094 + PGA1_c03430 0.58 +0.6
330,097 - PGA1_c03430 0.58 +0.3
330,103 + PGA1_c03430 0.60 -0.7
330,155 + PGA1_c03430 0.71 +0.1
330,171 - PGA1_c03430 0.75 -0.0
330,172 - PGA1_c03430 0.75 +0.1
330,196 + PGA1_c03430 0.81 +0.4
330,198 - PGA1_c03430 0.81 +0.5
330,250 + +0.4
330,287 + +0.2
330,332 - +1.2
330,333 - -0.2
330,367 + +0.1
330,375 - -0.6
330,385 + -0.3
330,393 - +1.0
330,402 + -0.1
330,402 + +0.2
330,405 - -0.7
330,801 + PGA1_c03440 0.68 -0.3
330,969 - +0.6
330,982 + +0.8

Or see this region's nucleotide sequence