Strain Fitness in Marinobacter adhaerens HP15 around HP15_3038

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3036 and HP15_3037 are separated by 151 nucleotidesHP15_3037 and HP15_3038 are separated by 22 nucleotidesHP15_3038 and HP15_3039 are separated by 14 nucleotides HP15_3036: HP15_3036 - efflux transporter, RND family, MFP subunit, at 3,182,051 to 3,183,145 _3036 HP15_3037: HP15_3037 - transcriptional regulator, TetR family protein, at 3,183,297 to 3,183,932 _3037 HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295 _3038 HP15_3039: HP15_3039 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 3,185,310 to 3,186,785 _3039 Position (kb) 3183 3184 3185 3186Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3183.046 kb on - strandat 3183.362 kb on - strand, within HP15_3037at 3183.413 kb on - strand, within HP15_3037at 3183.695 kb on - strand, within HP15_3037at 3183.803 kb on - strand, within HP15_3037at 3183.813 kb on + strand, within HP15_3037at 3183.813 kb on + strand, within HP15_3037at 3183.813 kb on + strand, within HP15_3037at 3183.831 kb on - strand, within HP15_3037at 3183.857 kb on + strand, within HP15_3037at 3183.865 kb on - strand, within HP15_3037at 3183.906 kb on - strandat 3184.014 kb on - strandat 3184.071 kb on - strandat 3184.114 kb on - strand, within HP15_3038at 3184.131 kb on - strand, within HP15_3038at 3184.179 kb on + strand, within HP15_3038at 3184.283 kb on + strand, within HP15_3038at 3184.286 kb on - strand, within HP15_3038at 3184.340 kb on + strand, within HP15_3038at 3184.368 kb on + strand, within HP15_3038at 3184.376 kb on - strand, within HP15_3038at 3184.508 kb on + strand, within HP15_3038at 3184.568 kb on + strand, within HP15_3038at 3184.643 kb on - strand, within HP15_3038at 3184.643 kb on - strand, within HP15_3038at 3184.760 kb on + strand, within HP15_3038at 3184.868 kb on - strand, within HP15_3038at 3184.931 kb on - strand, within HP15_3038at 3184.978 kb on - strand, within HP15_3038at 3185.073 kb on - strand, within HP15_3038at 3185.103 kb on + strand, within HP15_3038at 3185.122 kb on + strand, within HP15_3038at 3185.122 kb on + strand, within HP15_3038at 3185.219 kb on + strandat 3185.219 kb on + strandat 3185.386 kb on + strandat 3185.518 kb on - strand, within HP15_3039at 3185.542 kb on - strand, within HP15_3039at 3185.659 kb on + strand, within HP15_3039at 3185.761 kb on + strand, within HP15_3039at 3185.761 kb on + strand, within HP15_3039at 3185.943 kb on + strand, within HP15_3039at 3186.099 kb on - strand, within HP15_3039at 3186.101 kb on + strand, within HP15_3039at 3186.161 kb on - strand, within HP15_3039at 3186.278 kb on - strand, within HP15_3039at 3186.283 kb on - strand, within HP15_3039

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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3,183,046 - +0.1
3,183,362 - HP15_3037 0.10 -2.5
3,183,413 - HP15_3037 0.18 -2.2
3,183,695 - HP15_3037 0.63 -3.3
3,183,803 - HP15_3037 0.80 -3.3
3,183,813 + HP15_3037 0.81 -2.4
3,183,813 + HP15_3037 0.81 -4.2
3,183,813 + HP15_3037 0.81 -2.4
3,183,831 - HP15_3037 0.84 -2.6
3,183,857 + HP15_3037 0.88 -3.5
3,183,865 - HP15_3037 0.89 -3.3
3,183,906 - -3.1
3,184,014 - -0.0
3,184,071 - +0.2
3,184,114 - HP15_3038 0.12 -0.7
3,184,131 - HP15_3038 0.13 -0.2
3,184,179 + HP15_3038 0.17 +1.5
3,184,283 + HP15_3038 0.24 -0.7
3,184,286 - HP15_3038 0.25 +0.0
3,184,340 + HP15_3038 0.29 -0.1
3,184,368 + HP15_3038 0.31 -1.8
3,184,376 - HP15_3038 0.31 -1.3
3,184,508 + HP15_3038 0.41 -0.6
3,184,568 + HP15_3038 0.46 +0.1
3,184,643 - HP15_3038 0.51 -0.4
3,184,643 - HP15_3038 0.51 +0.6
3,184,760 + HP15_3038 0.60 -1.3
3,184,868 - HP15_3038 0.68 -0.1
3,184,931 - HP15_3038 0.73 -0.2
3,184,978 - HP15_3038 0.76 -0.5
3,185,073 - HP15_3038 0.83 -1.3
3,185,103 + HP15_3038 0.86 -0.7
3,185,122 + HP15_3038 0.87 -0.5
3,185,122 + HP15_3038 0.87 +0.6
3,185,219 + -0.8
3,185,219 + +0.1
3,185,386 + -1.0
3,185,518 - HP15_3039 0.14 -0.0
3,185,542 - HP15_3039 0.16 +0.1
3,185,659 + HP15_3039 0.24 -0.5
3,185,761 + HP15_3039 0.31 -1.4
3,185,761 + HP15_3039 0.31 -0.5
3,185,943 + HP15_3039 0.43 -1.5
3,186,099 - HP15_3039 0.53 -1.5
3,186,101 + HP15_3039 0.54 -0.1
3,186,161 - HP15_3039 0.58 -1.9
3,186,278 - HP15_3039 0.66 -1.9
3,186,283 - HP15_3039 0.66 -0.3

Or see this region's nucleotide sequence