Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2442 and HP15_2443 are separated by 100 nucleotides HP15_2443 and HP15_2444 are separated by 87 nucleotides HP15_2444 and HP15_2445 are separated by 22 nucleotides HP15_2445 and HP15_2446 are separated by 7 nucleotides HP15_2446 and HP15_2447 are separated by 94 nucleotides
HP15_2442: HP15_2442 - RNA polymerase, sigma 54 subunit, RpoN, at 2,579,904 to 2,581,430
_2442
HP15_2443: HP15_2443 - sigma 54 modulation protein/ribosomal protein S30EA, at 2,581,531 to 2,581,839
_2443
HP15_2444: HP15_2444 - PTS IIA-like nitrogen-regulatory protein PtsN, at 2,581,927 to 2,582,397
_2444
HP15_2445: HP15_2445 - protein yhbJ, at 2,582,420 to 2,583,310
_2445
HP15_2446: HP15_2446 - phosphotransferase system, phosphocarrier protein Hpr, at 2,583,318 to 2,583,587
_2446
HP15_2447: HP15_2447 - magnesium transporter, at 2,583,682 to 2,585,043
_2447
Position (kb)
2582
2583
2584 Strain fitness (log2 ratio)
-1
0
1 at 2581.452 kb on - strand at 2581.556 kb on + strand at 2581.710 kb on + strand, within HP15_2443 at 2582.528 kb on + strand, within HP15_2445 at 2582.574 kb on - strand, within HP15_2445 at 2582.858 kb on - strand, within HP15_2445 at 2582.893 kb on - strand, within HP15_2445 at 2583.009 kb on - strand, within HP15_2445 at 2583.141 kb on - strand, within HP15_2445 at 2583.199 kb on - strand, within HP15_2445 at 2583.206 kb on + strand, within HP15_2445 at 2583.255 kb on - strand at 2583.886 kb on + strand, within HP15_2447
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 2,581,452 - +1.3 2,581,556 + -1.2 2,581,710 + HP15_2443 0.58 +0.2 2,582,528 + HP15_2445 0.12 +1.1 2,582,574 - HP15_2445 0.17 +1.0 2,582,858 - HP15_2445 0.49 +0.5 2,582,893 - HP15_2445 0.53 +0.6 2,583,009 - HP15_2445 0.66 +0.1 2,583,141 - HP15_2445 0.81 -0.8 2,583,199 - HP15_2445 0.87 -0.7 2,583,206 + HP15_2445 0.88 +0.1 2,583,255 - +0.6 2,583,886 + HP15_2447 0.15 -1.6
Or see this region's nucleotide sequence