Experiment: m.b. Gentamicin 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23660 and PGA1_c23670 are separated by 322 nucleotides PGA1_c23670 and PGA1_c23680 are separated by 42 nucleotides PGA1_c23680 and PGA1_c23690 are separated by 557 nucleotides
PGA1_c23660: PGA1_c23660 - ferredoxin, at 2,468,986 to 2,469,309
_c23660
PGA1_c23670: PGA1_c23670 - Putative peptidoglycan binding domain., at 2,469,632 to 2,470,216
_c23670
PGA1_c23680: PGA1_c23680 - putative transcriptional regulator, crp family, at 2,470,259 to 2,471,020
_c23680
PGA1_c23690: PGA1_c23690 - protease do, at 2,471,578 to 2,473,092
_c23690
Position (kb)
2470
2471
2472 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2469.381 kb on - strand at 2469.424 kb on - strand at 2469.472 kb on + strand at 2469.491 kb on + strand at 2469.525 kb on + strand at 2469.528 kb on - strand at 2469.663 kb on + strand at 2469.665 kb on - strand at 2469.723 kb on + strand, within PGA1_c23670 at 2469.764 kb on - strand, within PGA1_c23670 at 2469.909 kb on + strand, within PGA1_c23670 at 2470.026 kb on - strand, within PGA1_c23670 at 2470.291 kb on + strand at 2470.333 kb on - strand at 2470.362 kb on - strand, within PGA1_c23680 at 2470.455 kb on + strand, within PGA1_c23680 at 2470.463 kb on - strand, within PGA1_c23680 at 2470.463 kb on - strand, within PGA1_c23680 at 2470.524 kb on + strand, within PGA1_c23680 at 2470.534 kb on + strand, within PGA1_c23680 at 2470.534 kb on + strand, within PGA1_c23680 at 2470.542 kb on - strand, within PGA1_c23680 at 2470.542 kb on - strand, within PGA1_c23680 at 2470.542 kb on - strand, within PGA1_c23680 at 2470.780 kb on - strand, within PGA1_c23680 at 2470.994 kb on - strand at 2471.108 kb on - strand at 2471.110 kb on + strand at 2471.110 kb on + strand at 2471.110 kb on + strand at 2471.118 kb on - strand at 2471.118 kb on - strand at 2471.118 kb on - strand at 2471.132 kb on - strand at 2471.425 kb on + strand at 2471.425 kb on + strand at 2471.425 kb on + strand at 2471.500 kb on + strand at 2471.524 kb on + strand at 2471.616 kb on - strand at 2471.618 kb on - strand at 2471.657 kb on + strand at 2471.725 kb on + strand at 2471.738 kb on - strand, within PGA1_c23690 at 2471.827 kb on + strand, within PGA1_c23690 at 2471.832 kb on + strand, within PGA1_c23690 at 2471.903 kb on + strand, within PGA1_c23690 at 2471.918 kb on + strand, within PGA1_c23690 at 2472.010 kb on - strand, within PGA1_c23690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Gentamicin 0.004 mg/ml remove 2,469,381 - -0.4 2,469,424 - +0.0 2,469,472 + +0.3 2,469,491 + -0.1 2,469,525 + -1.2 2,469,528 - +0.4 2,469,663 + -0.8 2,469,665 - +0.8 2,469,723 + PGA1_c23670 0.16 +0.4 2,469,764 - PGA1_c23670 0.23 +0.5 2,469,909 + PGA1_c23670 0.47 +0.5 2,470,026 - PGA1_c23670 0.67 +1.2 2,470,291 + +0.1 2,470,333 - -0.1 2,470,362 - PGA1_c23680 0.14 +0.4 2,470,455 + PGA1_c23680 0.26 -0.0 2,470,463 - PGA1_c23680 0.27 +0.8 2,470,463 - PGA1_c23680 0.27 -0.0 2,470,524 + PGA1_c23680 0.35 +0.4 2,470,534 + PGA1_c23680 0.36 +0.6 2,470,534 + PGA1_c23680 0.36 +0.2 2,470,542 - PGA1_c23680 0.37 +0.3 2,470,542 - PGA1_c23680 0.37 -0.8 2,470,542 - PGA1_c23680 0.37 -0.4 2,470,780 - PGA1_c23680 0.68 +1.2 2,470,994 - -0.9 2,471,108 - -0.1 2,471,110 + -3.3 2,471,110 + -0.2 2,471,110 + -4.0 2,471,118 - +0.6 2,471,118 - +0.7 2,471,118 - -0.1 2,471,132 - -0.7 2,471,425 + -0.5 2,471,425 + +0.2 2,471,425 + +0.7 2,471,500 + +0.5 2,471,524 + +0.9 2,471,616 - +0.1 2,471,618 - -0.4 2,471,657 + -0.6 2,471,725 + -0.3 2,471,738 - PGA1_c23690 0.11 -1.0 2,471,827 + PGA1_c23690 0.16 -2.0 2,471,832 + PGA1_c23690 0.17 -1.2 2,471,903 + PGA1_c23690 0.21 -0.8 2,471,918 + PGA1_c23690 0.22 -0.5 2,472,010 - PGA1_c23690 0.29 -0.6
Or see this region's nucleotide sequence