Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2161 and HP15_2162 are separated by 7 nucleotides HP15_2162 and HP15_2163 overlap by 1 nucleotides HP15_2163 and HP15_2164 overlap by 1 nucleotides
HP15_2161: HP15_2161 - sugar ABC transporter, permease protein, at 2,267,755 to 2,268,564
_2161
HP15_2162: HP15_2162 - sugar ABC transporter, permease protein, at 2,268,572 to 2,269,438
_2162
HP15_2163: HP15_2163 - sugar ABC transporter, ATP-binding protein, at 2,269,438 to 2,270,538
_2163
HP15_2164: HP15_2164 - ATP-binding protein of sugar ABC transporter, at 2,270,538 to 2,271,632
_2164
Position (kb)
2269
2270
2271 Strain fitness (log2 ratio)
-2
-1
0
1 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.438 kb on + strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.446 kb on - strand, within HP15_2161 at 2268.751 kb on + strand, within HP15_2162 at 2268.819 kb on + strand, within HP15_2162 at 2268.916 kb on + strand, within HP15_2162 at 2268.916 kb on + strand, within HP15_2162 at 2268.921 kb on + strand, within HP15_2162 at 2268.929 kb on - strand, within HP15_2162 at 2269.010 kb on + strand, within HP15_2162 at 2269.018 kb on - strand, within HP15_2162 at 2269.177 kb on - strand, within HP15_2162 at 2269.182 kb on + strand, within HP15_2162 at 2269.276 kb on + strand, within HP15_2162 at 2269.280 kb on + strand, within HP15_2162 at 2269.312 kb on - strand, within HP15_2162 at 2269.421 kb on + strand at 2269.467 kb on - strand at 2269.516 kb on - strand at 2269.573 kb on - strand, within HP15_2163 at 2269.612 kb on + strand, within HP15_2163 at 2269.846 kb on - strand, within HP15_2163 at 2269.856 kb on - strand, within HP15_2163 at 2269.902 kb on + strand, within HP15_2163 at 2269.928 kb on + strand, within HP15_2163 at 2269.929 kb on - strand, within HP15_2163 at 2270.012 kb on - strand, within HP15_2163 at 2270.041 kb on - strand, within HP15_2163 at 2270.064 kb on + strand, within HP15_2163 at 2270.366 kb on - strand, within HP15_2163 at 2270.404 kb on + strand, within HP15_2163 at 2270.412 kb on - strand, within HP15_2163 at 2270.490 kb on + strand at 2270.649 kb on + strand, within HP15_2164 at 2270.722 kb on + strand, within HP15_2164 at 2270.736 kb on + strand, within HP15_2164 at 2270.955 kb on + strand, within HP15_2164 at 2271.072 kb on + strand, within HP15_2164 at 2271.074 kb on + strand, within HP15_2164 at 2271.082 kb on - strand, within HP15_2164 at 2271.084 kb on - strand, within HP15_2164 at 2271.115 kb on + strand, within HP15_2164 at 2271.201 kb on + strand, within HP15_2164 at 2271.209 kb on - strand, within HP15_2164 at 2271.216 kb on - strand, within HP15_2164 at 2271.218 kb on + strand, within HP15_2164 at 2271.234 kb on - strand, within HP15_2164 at 2271.260 kb on - strand, within HP15_2164 at 2271.362 kb on + strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.484 kb on - strand, within HP15_2164 at 2271.521 kb on + strand, within HP15_2164
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 2,268,438 + HP15_2161 0.84 +0.5 2,268,438 + HP15_2161 0.84 -0.0 2,268,438 + HP15_2161 0.84 +0.1 2,268,438 + HP15_2161 0.84 -1.3 2,268,446 - HP15_2161 0.85 +0.4 2,268,446 - HP15_2161 0.85 +0.3 2,268,751 + HP15_2162 0.21 +0.9 2,268,819 + HP15_2162 0.28 +0.1 2,268,916 + HP15_2162 0.40 +0.8 2,268,916 + HP15_2162 0.40 +0.4 2,268,921 + HP15_2162 0.40 -0.4 2,268,929 - HP15_2162 0.41 +0.6 2,269,010 + HP15_2162 0.51 -0.3 2,269,018 - HP15_2162 0.51 +1.0 2,269,177 - HP15_2162 0.70 -0.5 2,269,182 + HP15_2162 0.70 -0.2 2,269,276 + HP15_2162 0.81 -0.1 2,269,280 + HP15_2162 0.82 +0.6 2,269,312 - HP15_2162 0.85 -0.2 2,269,421 + -0.2 2,269,467 - -0.0 2,269,516 - -0.2 2,269,573 - HP15_2163 0.12 +0.5 2,269,612 + HP15_2163 0.16 +0.2 2,269,846 - HP15_2163 0.37 +0.2 2,269,856 - HP15_2163 0.38 -0.0 2,269,902 + HP15_2163 0.42 +0.1 2,269,928 + HP15_2163 0.45 +0.3 2,269,929 - HP15_2163 0.45 +0.1 2,270,012 - HP15_2163 0.52 -0.1 2,270,041 - HP15_2163 0.55 -0.4 2,270,064 + HP15_2163 0.57 -0.2 2,270,366 - HP15_2163 0.84 +0.1 2,270,404 + HP15_2163 0.88 -0.8 2,270,412 - HP15_2163 0.88 -0.2 2,270,490 + +0.3 2,270,649 + HP15_2164 0.10 -0.6 2,270,722 + HP15_2164 0.17 +0.3 2,270,736 + HP15_2164 0.18 -0.1 2,270,955 + HP15_2164 0.38 -0.4 2,271,072 + HP15_2164 0.49 +0.3 2,271,074 + HP15_2164 0.49 +0.0 2,271,082 - HP15_2164 0.50 -0.5 2,271,084 - HP15_2164 0.50 -0.1 2,271,115 + HP15_2164 0.53 +0.2 2,271,201 + HP15_2164 0.61 +0.3 2,271,209 - HP15_2164 0.61 +0.3 2,271,216 - HP15_2164 0.62 -0.9 2,271,218 + HP15_2164 0.62 -1.8 2,271,234 - HP15_2164 0.64 -0.2 2,271,260 - HP15_2164 0.66 -0.6 2,271,362 + HP15_2164 0.75 +0.0 2,271,484 - HP15_2164 0.86 +0.3 2,271,484 - HP15_2164 0.86 +1.0 2,271,521 + HP15_2164 0.90 +0.8
Or see this region's nucleotide sequence