Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2153 and HP15_2154 are separated by 23 nucleotides HP15_2154 and HP15_2155 are separated by 11 nucleotides HP15_2155 and HP15_2156 are separated by 22 nucleotides
HP15_2153: HP15_2153 - extracellular ligand-binding receptor, at 2,258,074 to 2,259,323
_2153
HP15_2154: HP15_2154 - NADP-dependent glyceraldehyde-3-phosphate dehydrogenase, at 2,259,347 to 2,260,978
_2154
HP15_2155: HP15_2155 - triosephosphate isomerase, at 2,260,990 to 2,261,796
_2155
HP15_2156: HP15_2156 - phosphopyruvate hydratase, at 2,261,819 to 2,263,060
_2156
Position (kb)
2259
2260
2261 Strain fitness (log2 ratio)
-2
-1
0
1 at 2258.369 kb on - strand, within HP15_2153 at 2258.524 kb on - strand, within HP15_2153 at 2258.531 kb on + strand, within HP15_2153 at 2258.535 kb on + strand, within HP15_2153 at 2258.605 kb on + strand, within HP15_2153 at 2258.960 kb on + strand, within HP15_2153 at 2258.996 kb on - strand, within HP15_2153 at 2259.085 kb on - strand, within HP15_2153 at 2259.166 kb on - strand, within HP15_2153 at 2259.353 kb on - strand at 2259.447 kb on + strand at 2259.471 kb on - strand at 2259.505 kb on + strand at 2259.540 kb on + strand, within HP15_2154 at 2259.558 kb on + strand, within HP15_2154 at 2259.560 kb on - strand, within HP15_2154 at 2259.572 kb on + strand, within HP15_2154 at 2259.607 kb on + strand, within HP15_2154 at 2259.638 kb on - strand, within HP15_2154 at 2259.759 kb on + strand, within HP15_2154 at 2259.900 kb on + strand, within HP15_2154 at 2259.924 kb on + strand, within HP15_2154 at 2260.011 kb on + strand, within HP15_2154 at 2260.228 kb on + strand, within HP15_2154 at 2260.247 kb on - strand, within HP15_2154 at 2260.247 kb on - strand, within HP15_2154 at 2260.417 kb on + strand, within HP15_2154 at 2260.420 kb on - strand, within HP15_2154 at 2260.425 kb on - strand, within HP15_2154 at 2260.437 kb on - strand, within HP15_2154 at 2260.531 kb on + strand, within HP15_2154 at 2260.649 kb on - strand, within HP15_2154 at 2260.673 kb on + strand, within HP15_2154 at 2260.698 kb on + strand, within HP15_2154 at 2260.718 kb on - strand, within HP15_2154 at 2260.718 kb on - strand, within HP15_2154 at 2260.760 kb on + strand, within HP15_2154 at 2260.805 kb on + strand, within HP15_2154 at 2260.813 kb on - strand, within HP15_2154 at 2260.851 kb on - strand at 2260.861 kb on - strand at 2260.895 kb on + strand at 2261.111 kb on + strand, within HP15_2155 at 2261.113 kb on + strand, within HP15_2155 at 2261.121 kb on + strand, within HP15_2155 at 2261.147 kb on - strand, within HP15_2155 at 2261.147 kb on - strand, within HP15_2155 at 2261.403 kb on - strand, within HP15_2155 at 2261.435 kb on - strand, within HP15_2155 at 2261.473 kb on - strand, within HP15_2155 at 2261.520 kb on - strand, within HP15_2155 at 2261.591 kb on - strand, within HP15_2155 at 2261.663 kb on - strand, within HP15_2155 at 2261.909 kb on - strand at 2261.920 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 2,258,369 - HP15_2153 0.24 +0.3 2,258,524 - HP15_2153 0.36 -0.1 2,258,531 + HP15_2153 0.37 -0.3 2,258,535 + HP15_2153 0.37 +0.1 2,258,605 + HP15_2153 0.42 -0.5 2,258,960 + HP15_2153 0.71 -0.3 2,258,996 - HP15_2153 0.74 +0.2 2,259,085 - HP15_2153 0.81 -1.7 2,259,166 - HP15_2153 0.87 +0.5 2,259,353 - -0.1 2,259,447 + +0.5 2,259,471 - -0.4 2,259,505 + +0.3 2,259,540 + HP15_2154 0.12 +0.2 2,259,558 + HP15_2154 0.13 -0.6 2,259,560 - HP15_2154 0.13 -0.1 2,259,572 + HP15_2154 0.14 -0.8 2,259,607 + HP15_2154 0.16 -0.1 2,259,638 - HP15_2154 0.18 +1.0 2,259,759 + HP15_2154 0.25 +0.2 2,259,900 + HP15_2154 0.34 -0.5 2,259,924 + HP15_2154 0.35 +0.4 2,260,011 + HP15_2154 0.41 +0.1 2,260,228 + HP15_2154 0.54 +0.0 2,260,247 - HP15_2154 0.55 -0.1 2,260,247 - HP15_2154 0.55 +0.4 2,260,417 + HP15_2154 0.66 -0.2 2,260,420 - HP15_2154 0.66 -2.5 2,260,425 - HP15_2154 0.66 +0.3 2,260,437 - HP15_2154 0.67 +0.2 2,260,531 + HP15_2154 0.73 -1.1 2,260,649 - HP15_2154 0.80 +0.4 2,260,673 + HP15_2154 0.81 +0.3 2,260,698 + HP15_2154 0.83 +0.2 2,260,718 - HP15_2154 0.84 +0.2 2,260,718 - HP15_2154 0.84 -0.0 2,260,760 + HP15_2154 0.87 +0.2 2,260,805 + HP15_2154 0.89 +0.9 2,260,813 - HP15_2154 0.90 +0.1 2,260,851 - +0.5 2,260,861 - +0.2 2,260,895 + +0.2 2,261,111 + HP15_2155 0.15 +0.5 2,261,113 + HP15_2155 0.15 +0.3 2,261,121 + HP15_2155 0.16 -0.9 2,261,147 - HP15_2155 0.19 -1.4 2,261,147 - HP15_2155 0.19 +0.2 2,261,403 - HP15_2155 0.51 +0.9 2,261,435 - HP15_2155 0.55 +0.5 2,261,473 - HP15_2155 0.60 +1.2 2,261,520 - HP15_2155 0.66 +1.0 2,261,591 - HP15_2155 0.74 +0.9 2,261,663 - HP15_2155 0.83 -1.2 2,261,909 - -0.2 2,261,920 + +0.6
Or see this region's nucleotide sequence