Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1860 and HP15_1861 are separated by 143 nucleotides HP15_1861 and HP15_1862 are separated by 12 nucleotides HP15_1862 and HP15_1863 are separated by 150 nucleotides
HP15_1860: HP15_1860 - VacJ family lipoprotein, at 1,963,370 to 1,964,161
_1860
HP15_1861: HP15_1861 - thioesterase superfamily protein, at 1,964,305 to 1,964,655
_1861
HP15_1862: HP15_1862 - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,964,668 to 1,965,789
_1862
HP15_1863: HP15_1863 - RNA helicase, ATP-dependent DEAH box, HrpA type, at 1,965,940 to 1,969,875
_1863
Position (kb)
1964
1965
1966 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 1963.749 kb on - strand, within HP15_1860 at 1963.777 kb on + strand, within HP15_1860 at 1963.777 kb on + strand, within HP15_1860 at 1963.784 kb on + strand, within HP15_1860 at 1963.867 kb on + strand, within HP15_1860 at 1964.035 kb on - strand, within HP15_1860 at 1964.249 kb on + strand at 1964.274 kb on + strand at 1964.284 kb on - strand at 1964.343 kb on - strand, within HP15_1861 at 1964.381 kb on + strand, within HP15_1861 at 1964.425 kb on + strand, within HP15_1861 at 1964.503 kb on + strand, within HP15_1861 at 1964.808 kb on + strand, within HP15_1862 at 1964.855 kb on + strand, within HP15_1862 at 1964.856 kb on - strand, within HP15_1862 at 1964.882 kb on - strand, within HP15_1862 at 1965.128 kb on + strand, within HP15_1862 at 1965.311 kb on - strand, within HP15_1862 at 1965.311 kb on - strand, within HP15_1862 at 1965.416 kb on - strand, within HP15_1862 at 1965.506 kb on + strand, within HP15_1862 at 1965.683 kb on + strand at 1965.691 kb on - strand at 1965.701 kb on - strand at 1965.713 kb on + strand at 1965.762 kb on - strand at 1965.808 kb on - strand at 1966.079 kb on - strand at 1966.079 kb on - strand at 1966.128 kb on + strand at 1966.136 kb on - strand at 1966.136 kb on - strand at 1966.208 kb on - strand at 1966.367 kb on + strand, within HP15_1863 at 1966.388 kb on + strand, within HP15_1863 at 1966.438 kb on + strand, within HP15_1863 at 1966.454 kb on - strand, within HP15_1863 at 1966.568 kb on - strand, within HP15_1863 at 1966.673 kb on - strand, within HP15_1863
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 1,963,749 - HP15_1860 0.48 -4.0 1,963,777 + HP15_1860 0.51 -4.1 1,963,777 + HP15_1860 0.51 -3.9 1,963,784 + HP15_1860 0.52 -6.6 1,963,867 + HP15_1860 0.63 -1.7 1,964,035 - HP15_1860 0.84 -2.8 1,964,249 + -3.3 1,964,274 + -6.9 1,964,284 - -1.0 1,964,343 - HP15_1861 0.11 -0.3 1,964,381 + HP15_1861 0.22 -3.2 1,964,425 + HP15_1861 0.34 -6.1 1,964,503 + HP15_1861 0.56 -1.2 1,964,808 + HP15_1862 0.12 -0.3 1,964,855 + HP15_1862 0.17 +0.2 1,964,856 - HP15_1862 0.17 +0.0 1,964,882 - HP15_1862 0.19 +0.3 1,965,128 + HP15_1862 0.41 +0.8 1,965,311 - HP15_1862 0.57 -0.4 1,965,311 - HP15_1862 0.57 -0.4 1,965,416 - HP15_1862 0.67 -0.8 1,965,506 + HP15_1862 0.75 -1.0 1,965,683 + -0.4 1,965,691 - -1.4 1,965,701 - -0.7 1,965,713 + -0.9 1,965,762 - -0.8 1,965,808 - -1.0 1,966,079 - +0.4 1,966,079 - +0.3 1,966,128 + +0.2 1,966,136 - -0.8 1,966,136 - +0.3 1,966,208 - +1.9 1,966,367 + HP15_1863 0.11 -0.0 1,966,388 + HP15_1863 0.11 +0.1 1,966,438 + HP15_1863 0.13 +0.1 1,966,454 - HP15_1863 0.13 +0.4 1,966,568 - HP15_1863 0.16 -0.7 1,966,673 - HP15_1863 0.19 +0.6
Or see this region's nucleotide sequence