Strain Fitness in Marinobacter adhaerens HP15 around HP15_1503

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1500 and HP15_1501 are separated by 30 nucleotidesHP15_1501 and HP15_1502 are separated by 41 nucleotidesHP15_1502 and HP15_tRNA28 are separated by 51 nucleotidesHP15_tRNA28 and HP15_1503 are separated by 115 nucleotidesHP15_1503 and HP15_1504 are separated by 53 nucleotidesHP15_1504 and HP15_1505 are separated by 103 nucleotides HP15_1500: HP15_1500 - sensory box/GGDEF family protein, at 1,576,858 to 1,579,287 _1500 HP15_1501: HP15_1501 - hypothetical protein, at 1,579,318 to 1,579,473 _1501 HP15_1502: HP15_1502 - conserved hypothetical protein, at 1,579,515 to 1,579,661 _1502 HP15_tRNA28: HP15_tRNA28 - tRNA-Glu, at 1,579,713 to 1,579,788 _tRNA28 HP15_1503: HP15_1503 - nucleoside-diphosphate sugar epimerase, at 1,579,904 to 1,580,830 _1503 HP15_1504: HP15_1504 - cobalamin (vitamin B12) biosynthesis CbiX protein, at 1,580,884 to 1,581,258 _1504 HP15_1505: HP15_1505 - protein containing DUF924, bacterial, at 1,581,362 to 1,581,964 _1505 Position (kb) 1579 1580 1581Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1578.912 kb on + strand, within HP15_1500at 1579.052 kb on + strandat 1579.071 kb on + strandat 1579.071 kb on + strandat 1579.078 kb on + strandat 1579.079 kb on - strandat 1579.155 kb on - strandat 1579.270 kb on + strandat 1579.432 kb on + strand, within HP15_1501at 1579.446 kb on - strand, within HP15_1501at 1579.536 kb on + strand, within HP15_1502at 1579.952 kb on - strandat 1579.954 kb on + strandat 1580.096 kb on + strand, within HP15_1503at 1580.096 kb on + strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.175 kb on - strand, within HP15_1503at 1580.210 kb on + strand, within HP15_1503at 1580.278 kb on + strand, within HP15_1503at 1580.361 kb on - strand, within HP15_1503at 1580.540 kb on - strand, within HP15_1503at 1580.600 kb on + strand, within HP15_1503at 1580.839 kb on + strandat 1580.867 kb on + strandat 1581.132 kb on + strand, within HP15_1504at 1581.466 kb on - strand, within HP15_1505at 1581.473 kb on - strandat 1581.665 kb on - strand, within HP15_1505at 1581.674 kb on + strand, within HP15_1505at 1581.739 kb on + strand, within HP15_1505at 1581.754 kb on + strand, within HP15_1505at 1581.798 kb on + strand, within HP15_1505

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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1,578,912 + HP15_1500 0.85 +0.1
1,579,052 + -1.0
1,579,071 + +0.7
1,579,071 + +0.5
1,579,078 + +0.4
1,579,079 - +0.3
1,579,155 - +0.5
1,579,270 + -0.6
1,579,432 + HP15_1501 0.73 -0.6
1,579,446 - HP15_1501 0.82 +0.3
1,579,536 + HP15_1502 0.14 -1.2
1,579,952 - -0.1
1,579,954 + -1.4
1,580,096 + HP15_1503 0.21 -0.2
1,580,096 + HP15_1503 0.21 -0.0
1,580,175 - HP15_1503 0.29 -0.7
1,580,175 - HP15_1503 0.29 +0.6
1,580,175 - HP15_1503 0.29 -0.1
1,580,175 - HP15_1503 0.29 +0.3
1,580,210 + HP15_1503 0.33 +0.3
1,580,278 + HP15_1503 0.40 +0.1
1,580,361 - HP15_1503 0.49 +0.1
1,580,540 - HP15_1503 0.69 -0.8
1,580,600 + HP15_1503 0.75 -1.3
1,580,839 + +0.6
1,580,867 + +0.7
1,581,132 + HP15_1504 0.66 -4.5
1,581,466 - HP15_1505 0.17 -0.2
1,581,473 - +0.6
1,581,665 - HP15_1505 0.50 -0.2
1,581,674 + HP15_1505 0.52 -0.3
1,581,739 + HP15_1505 0.63 +0.3
1,581,754 + HP15_1505 0.65 -0.1
1,581,798 + HP15_1505 0.72 -0.2

Or see this region's nucleotide sequence