Strain Fitness in Marinobacter adhaerens HP15 around HP15_1225

Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1223 and HP15_1224 are separated by 12 nucleotidesHP15_1224 and HP15_1225 overlap by 1 nucleotidesHP15_1225 and HP15_1226 are separated by 57 nucleotidesHP15_1226 and HP15_1227 overlap by 11 nucleotides HP15_1223: HP15_1223 - protein YaaA, at 1,272,717 to 1,273,487 _1223 HP15_1224: HP15_1224 - glutaredoxin 2, at 1,273,500 to 1,273,733 _1224 HP15_1225: HP15_1225 - oxidoreductase, short chain dehydrogenase/reductase family, at 1,273,733 to 1,274,482 _1225 HP15_1226: HP15_1226 - 2-phosphoglycolate phosphatase, prokaryotic, at 1,274,540 to 1,275,211 _1226 HP15_1227: HP15_1227 - 3-demethylubiquinone-9 3-methyltransferase, at 1,275,201 to 1,275,941 _1227 Position (kb) 1273 1274 1275Strain fitness (log2 ratio) -2 -1 0 1at 1272.774 kb on + strandat 1272.796 kb on + strand, within HP15_1223at 1272.815 kb on + strand, within HP15_1223at 1272.823 kb on - strand, within HP15_1223at 1272.883 kb on + strand, within HP15_1223at 1272.985 kb on - strand, within HP15_1223at 1273.542 kb on + strand, within HP15_1224at 1273.550 kb on - strand, within HP15_1224at 1273.678 kb on + strand, within HP15_1224at 1273.698 kb on - strand, within HP15_1224at 1274.002 kb on - strand, within HP15_1225at 1274.092 kb on - strand, within HP15_1225at 1274.189 kb on - strand, within HP15_1225at 1274.270 kb on - strand, within HP15_1225at 1274.390 kb on - strand, within HP15_1225at 1274.484 kb on + strandat 1274.486 kb on - strandat 1275.206 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml
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1,272,774 + +0.3
1,272,796 + HP15_1223 0.10 +1.1
1,272,815 + HP15_1223 0.13 +1.2
1,272,823 - HP15_1223 0.14 +1.0
1,272,883 + HP15_1223 0.22 +0.5
1,272,985 - HP15_1223 0.35 +0.8
1,273,542 + HP15_1224 0.18 +0.8
1,273,550 - HP15_1224 0.21 +0.0
1,273,678 + HP15_1224 0.76 +0.6
1,273,698 - HP15_1224 0.85 -0.3
1,274,002 - HP15_1225 0.36 -0.7
1,274,092 - HP15_1225 0.48 -0.4
1,274,189 - HP15_1225 0.61 -1.9
1,274,270 - HP15_1225 0.72 -0.9
1,274,390 - HP15_1225 0.88 +0.3
1,274,484 + +0.8
1,274,486 - +0.1
1,275,206 - +0.3

Or see this region's nucleotide sequence