Experiment: m.b. Benzalkonium Chloride 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1030 and HP15_1031 are separated by 1 nucleotides HP15_1031 and HP15_1032 overlap by 4 nucleotides HP15_1032 and HP15_1033 are separated by 92 nucleotides
HP15_1030: HP15_1030 - sulfate permease family protein, at 1,048,090 to 1,049,577
_1030
HP15_1031: HP15_1031 - UspA domain protein, at 1,049,579 to 1,050,505
_1031
HP15_1032: HP15_1032 - phospholipase, patatin family, at 1,050,502 to 1,051,368
_1032
HP15_1033: HP15_1033 - flavoprotein, NADB Rossmann superfamily, at 1,051,461 to 1,052,642
_1033
Position (kb)
1049
1050
1051 Strain fitness (log2 ratio)
-1
0
1
2 at 1048.593 kb on + strand, within HP15_1030 at 1048.606 kb on + strand, within HP15_1030 at 1048.644 kb on + strand, within HP15_1030 at 1048.734 kb on + strand, within HP15_1030 at 1048.766 kb on - strand, within HP15_1030 at 1048.784 kb on - strand, within HP15_1030 at 1048.846 kb on - strand, within HP15_1030 at 1048.848 kb on + strand, within HP15_1030 at 1048.867 kb on + strand, within HP15_1030 at 1048.867 kb on + strand, within HP15_1030 at 1048.867 kb on + strand, within HP15_1030 at 1048.875 kb on - strand, within HP15_1030 at 1048.875 kb on - strand, within HP15_1030 at 1048.875 kb on - strand, within HP15_1030 at 1048.907 kb on - strand, within HP15_1030 at 1049.180 kb on + strand, within HP15_1030 at 1049.195 kb on + strand, within HP15_1030 at 1049.208 kb on - strand, within HP15_1030 at 1049.232 kb on - strand, within HP15_1030 at 1049.314 kb on + strand, within HP15_1030 at 1049.439 kb on + strand at 1049.442 kb on - strand at 1049.447 kb on - strand at 1049.447 kb on - strand at 1049.447 kb on - strand at 1050.010 kb on - strand, within HP15_1031 at 1050.027 kb on - strand, within HP15_1031 at 1050.034 kb on - strand, within HP15_1031 at 1050.179 kb on + strand, within HP15_1031 at 1050.187 kb on - strand, within HP15_1031 at 1050.247 kb on + strand, within HP15_1031 at 1050.255 kb on - strand, within HP15_1031 at 1050.270 kb on + strand, within HP15_1031 at 1050.288 kb on - strand, within HP15_1031 at 1050.457 kb on - strand at 1050.530 kb on + strand at 1050.530 kb on + strand at 1050.530 kb on + strand at 1050.543 kb on - strand at 1050.683 kb on - strand, within HP15_1032 at 1050.790 kb on - strand, within HP15_1032 at 1050.824 kb on + strand, within HP15_1032 at 1050.883 kb on - strand, within HP15_1032 at 1050.921 kb on - strand, within HP15_1032 at 1050.934 kb on - strand, within HP15_1032 at 1050.966 kb on - strand, within HP15_1032 at 1050.987 kb on + strand, within HP15_1032 at 1051.000 kb on - strand, within HP15_1032 at 1051.039 kb on + strand, within HP15_1032 at 1051.120 kb on - strand, within HP15_1032 at 1051.253 kb on + strand, within HP15_1032 at 1051.261 kb on - strand, within HP15_1032 at 1051.276 kb on + strand, within HP15_1032 at 1051.285 kb on - strand at 1051.392 kb on - strand at 1051.401 kb on + strand at 1051.409 kb on - strand at 1051.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzalkonium Chloride 0.004 mg/ml remove 1,048,593 + HP15_1030 0.34 -0.4 1,048,606 + HP15_1030 0.35 -0.6 1,048,644 + HP15_1030 0.37 -0.2 1,048,734 + HP15_1030 0.43 +1.1 1,048,766 - HP15_1030 0.45 -0.1 1,048,784 - HP15_1030 0.47 +0.1 1,048,846 - HP15_1030 0.51 +1.8 1,048,848 + HP15_1030 0.51 -0.1 1,048,867 + HP15_1030 0.52 +1.1 1,048,867 + HP15_1030 0.52 -0.2 1,048,867 + HP15_1030 0.52 -0.1 1,048,875 - HP15_1030 0.53 -0.8 1,048,875 - HP15_1030 0.53 +0.5 1,048,875 - HP15_1030 0.53 +0.3 1,048,907 - HP15_1030 0.55 -0.2 1,049,180 + HP15_1030 0.73 +0.9 1,049,195 + HP15_1030 0.74 -1.0 1,049,208 - HP15_1030 0.75 -0.2 1,049,232 - HP15_1030 0.77 +0.3 1,049,314 + HP15_1030 0.82 -0.3 1,049,439 + +0.6 1,049,442 - +0.5 1,049,447 - +0.8 1,049,447 - +0.3 1,049,447 - -0.4 1,050,010 - HP15_1031 0.46 -0.2 1,050,027 - HP15_1031 0.48 -0.1 1,050,034 - HP15_1031 0.49 +0.2 1,050,179 + HP15_1031 0.65 +0.2 1,050,187 - HP15_1031 0.66 -1.4 1,050,247 + HP15_1031 0.72 -0.9 1,050,255 - HP15_1031 0.73 -0.1 1,050,270 + HP15_1031 0.75 -0.7 1,050,288 - HP15_1031 0.76 -0.1 1,050,457 - +0.4 1,050,530 + +0.5 1,050,530 + -0.6 1,050,530 + -1.0 1,050,543 - +0.2 1,050,683 - HP15_1032 0.21 -0.0 1,050,790 - HP15_1032 0.33 +0.3 1,050,824 + HP15_1032 0.37 +0.5 1,050,883 - HP15_1032 0.44 -1.1 1,050,921 - HP15_1032 0.48 -0.1 1,050,934 - HP15_1032 0.50 -0.0 1,050,966 - HP15_1032 0.54 -0.1 1,050,987 + HP15_1032 0.56 -0.0 1,051,000 - HP15_1032 0.57 +0.6 1,051,039 + HP15_1032 0.62 +0.1 1,051,120 - HP15_1032 0.71 -0.1 1,051,253 + HP15_1032 0.87 -0.0 1,051,261 - HP15_1032 0.88 +0.2 1,051,276 + HP15_1032 0.89 +0.5 1,051,285 - +0.3 1,051,392 - -1.1 1,051,401 + -0.5 1,051,409 - +0.6 1,051,420 - +0.6
Or see this region's nucleotide sequence