Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26600

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26595 and BWI76_RS26600 are separated by 35 nucleotidesBWI76_RS26600 and BWI76_RS26605 are separated by 101 nucleotidesBWI76_RS26605 and BWI76_RS26610 are separated by 7 nucleotides BWI76_RS26595: BWI76_RS26595 - FAD-dependent oxidoreductase, at 5,505,378 to 5,506,577 _RS26595 BWI76_RS26600: BWI76_RS26600 - hypothetical protein, at 5,506,613 to 5,506,912 _RS26600 BWI76_RS26605: BWI76_RS26605 - 16S rRNA (guanine(1516)-N(2))-methyltransferase, at 5,507,014 to 5,507,793 _RS26605 BWI76_RS26610: BWI76_RS26610 - oligopeptidase A, at 5,507,801 to 5,509,843 _RS26610 Position (kb) 5506 5507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5505.628 kb on + strand, within BWI76_RS26595at 5505.628 kb on + strand, within BWI76_RS26595at 5505.984 kb on + strand, within BWI76_RS26595at 5506.066 kb on + strand, within BWI76_RS26595at 5506.074 kb on - strand, within BWI76_RS26595at 5506.167 kb on - strand, within BWI76_RS26595at 5506.184 kb on - strand, within BWI76_RS26595at 5506.407 kb on - strand, within BWI76_RS26595at 5506.407 kb on - strand, within BWI76_RS26595at 5506.644 kb on + strand, within BWI76_RS26600at 5506.644 kb on + strand, within BWI76_RS26600at 5506.652 kb on - strand, within BWI76_RS26600at 5506.659 kb on + strand, within BWI76_RS26600at 5506.700 kb on + strand, within BWI76_RS26600at 5506.708 kb on - strand, within BWI76_RS26600at 5506.723 kb on - strand, within BWI76_RS26600at 5506.754 kb on - strand, within BWI76_RS26600at 5506.820 kb on - strand, within BWI76_RS26600at 5506.877 kb on + strand, within BWI76_RS26600at 5506.877 kb on + strand, within BWI76_RS26600at 5506.885 kb on - strandat 5506.919 kb on - strandat 5507.148 kb on - strand, within BWI76_RS26605at 5507.185 kb on - strand, within BWI76_RS26605at 5507.285 kb on + strand, within BWI76_RS26605at 5507.290 kb on + strand, within BWI76_RS26605at 5507.307 kb on + strand, within BWI76_RS26605at 5507.315 kb on - strand, within BWI76_RS26605at 5507.315 kb on - strand, within BWI76_RS26605at 5507.315 kb on - strand, within BWI76_RS26605at 5507.339 kb on - strand, within BWI76_RS26605at 5507.390 kb on + strand, within BWI76_RS26605at 5507.406 kb on + strand, within BWI76_RS26605at 5507.464 kb on + strand, within BWI76_RS26605at 5507.739 kb on + strandat 5507.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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5,505,628 + BWI76_RS26595 0.21 +0.4
5,505,628 + BWI76_RS26595 0.21 -1.3
5,505,984 + BWI76_RS26595 0.51 +0.7
5,506,066 + BWI76_RS26595 0.57 -1.1
5,506,074 - BWI76_RS26595 0.58 +0.1
5,506,167 - BWI76_RS26595 0.66 -0.7
5,506,184 - BWI76_RS26595 0.67 +0.3
5,506,407 - BWI76_RS26595 0.86 +1.4
5,506,407 - BWI76_RS26595 0.86 +0.0
5,506,644 + BWI76_RS26600 0.10 -1.0
5,506,644 + BWI76_RS26600 0.10 -0.4
5,506,652 - BWI76_RS26600 0.13 +0.9
5,506,659 + BWI76_RS26600 0.15 +1.7
5,506,700 + BWI76_RS26600 0.29 -0.6
5,506,708 - BWI76_RS26600 0.32 -0.1
5,506,723 - BWI76_RS26600 0.37 +0.7
5,506,754 - BWI76_RS26600 0.47 -0.1
5,506,820 - BWI76_RS26600 0.69 +2.8
5,506,877 + BWI76_RS26600 0.88 +0.2
5,506,877 + BWI76_RS26600 0.88 +0.8
5,506,885 - +0.4
5,506,919 - +1.0
5,507,148 - BWI76_RS26605 0.17 -0.1
5,507,185 - BWI76_RS26605 0.22 -1.1
5,507,285 + BWI76_RS26605 0.35 +1.5
5,507,290 + BWI76_RS26605 0.35 -2.5
5,507,307 + BWI76_RS26605 0.38 -2.0
5,507,315 - BWI76_RS26605 0.39 -0.9
5,507,315 - BWI76_RS26605 0.39 +2.0
5,507,315 - BWI76_RS26605 0.39 -3.6
5,507,339 - BWI76_RS26605 0.42 -1.3
5,507,390 + BWI76_RS26605 0.48 -1.9
5,507,406 + BWI76_RS26605 0.50 -2.7
5,507,464 + BWI76_RS26605 0.58 -3.4
5,507,739 + -2.1
5,507,814 - -2.7

Or see this region's nucleotide sequence