Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26585 and BWI76_RS26590 are separated by 87 nucleotides BWI76_RS26590 and BWI76_RS26595 are separated by 231 nucleotides BWI76_RS26595 and BWI76_RS26600 are separated by 35 nucleotides BWI76_RS26600 and BWI76_RS26605 are separated by 101 nucleotides
BWI76_RS26585: BWI76_RS26585 - MFS transporter, at 5,503,083 to 5,504,555
_RS26585
BWI76_RS26590: BWI76_RS26590 - transcriptional regulator, at 5,504,643 to 5,505,146
_RS26590
BWI76_RS26595: BWI76_RS26595 - FAD-dependent oxidoreductase, at 5,505,378 to 5,506,577
_RS26595
BWI76_RS26600: BWI76_RS26600 - hypothetical protein, at 5,506,613 to 5,506,912
_RS26600
BWI76_RS26605: BWI76_RS26605 - 16S rRNA (guanine(1516)-N(2))-methyltransferase, at 5,507,014 to 5,507,793
_RS26605
Position (kb) 5505
5506
5507 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5504.583 kb on - strand at 5504.670 kb on - strand at 5504.741 kb on + strand, within BWI76_RS26590 at 5504.915 kb on + strand, within BWI76_RS26590 at 5504.930 kb on - strand, within BWI76_RS26590 at 5505.143 kb on - strand at 5505.380 kb on - strand at 5505.429 kb on + strand at 5505.437 kb on - strand at 5505.483 kb on - strand at 5505.499 kb on - strand, within BWI76_RS26595 at 5505.504 kb on - strand, within BWI76_RS26595 at 5505.628 kb on + strand, within BWI76_RS26595 at 5505.628 kb on + strand, within BWI76_RS26595 at 5505.984 kb on + strand, within BWI76_RS26595 at 5506.066 kb on + strand, within BWI76_RS26595 at 5506.074 kb on - strand, within BWI76_RS26595 at 5506.167 kb on - strand, within BWI76_RS26595 at 5506.184 kb on - strand, within BWI76_RS26595 at 5506.407 kb on - strand, within BWI76_RS26595 at 5506.407 kb on - strand, within BWI76_RS26595 at 5506.644 kb on + strand, within BWI76_RS26600 at 5506.644 kb on + strand, within BWI76_RS26600 at 5506.652 kb on - strand, within BWI76_RS26600 at 5506.659 kb on + strand, within BWI76_RS26600 at 5506.700 kb on + strand, within BWI76_RS26600 at 5506.708 kb on - strand, within BWI76_RS26600 at 5506.723 kb on - strand, within BWI76_RS26600 at 5506.754 kb on - strand, within BWI76_RS26600 at 5506.820 kb on - strand, within BWI76_RS26600 at 5506.877 kb on + strand, within BWI76_RS26600 at 5506.877 kb on + strand, within BWI76_RS26600 at 5506.885 kb on - strand at 5506.919 kb on - strand at 5507.148 kb on - strand, within BWI76_RS26605 at 5507.185 kb on - strand, within BWI76_RS26605 at 5507.285 kb on + strand, within BWI76_RS26605 at 5507.290 kb on + strand, within BWI76_RS26605 at 5507.307 kb on + strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.315 kb on - strand, within BWI76_RS26605 at 5507.339 kb on - strand, within BWI76_RS26605 at 5507.390 kb on + strand, within BWI76_RS26605 at 5507.406 kb on + strand, within BWI76_RS26605 at 5507.464 kb on + strand, within BWI76_RS26605
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,504,583 - -0.5 5,504,670 - +0.8 5,504,741 + BWI76_RS26590 0.19 -0.6 5,504,915 + BWI76_RS26590 0.54 -1.0 5,504,930 - BWI76_RS26590 0.57 +0.3 5,505,143 - +0.5 5,505,380 - +0.4 5,505,429 + -1.6 5,505,437 - -0.5 5,505,483 - -2.4 5,505,499 - BWI76_RS26595 0.10 +0.4 5,505,504 - BWI76_RS26595 0.10 -0.2 5,505,628 + BWI76_RS26595 0.21 +0.4 5,505,628 + BWI76_RS26595 0.21 -1.3 5,505,984 + BWI76_RS26595 0.51 +0.7 5,506,066 + BWI76_RS26595 0.57 -1.1 5,506,074 - BWI76_RS26595 0.58 +0.1 5,506,167 - BWI76_RS26595 0.66 -0.7 5,506,184 - BWI76_RS26595 0.67 +0.3 5,506,407 - BWI76_RS26595 0.86 +1.4 5,506,407 - BWI76_RS26595 0.86 +0.0 5,506,644 + BWI76_RS26600 0.10 -1.0 5,506,644 + BWI76_RS26600 0.10 -0.4 5,506,652 - BWI76_RS26600 0.13 +0.9 5,506,659 + BWI76_RS26600 0.15 +1.7 5,506,700 + BWI76_RS26600 0.29 -0.6 5,506,708 - BWI76_RS26600 0.32 -0.1 5,506,723 - BWI76_RS26600 0.37 +0.7 5,506,754 - BWI76_RS26600 0.47 -0.1 5,506,820 - BWI76_RS26600 0.69 +2.8 5,506,877 + BWI76_RS26600 0.88 +0.2 5,506,877 + BWI76_RS26600 0.88 +0.8 5,506,885 - +0.4 5,506,919 - +1.0 5,507,148 - BWI76_RS26605 0.17 -0.1 5,507,185 - BWI76_RS26605 0.22 -1.1 5,507,285 + BWI76_RS26605 0.35 +1.5 5,507,290 + BWI76_RS26605 0.35 -2.5 5,507,307 + BWI76_RS26605 0.38 -2.0 5,507,315 - BWI76_RS26605 0.39 -0.9 5,507,315 - BWI76_RS26605 0.39 +2.0 5,507,315 - BWI76_RS26605 0.39 -3.6 5,507,339 - BWI76_RS26605 0.42 -1.3 5,507,390 + BWI76_RS26605 0.48 -1.9 5,507,406 + BWI76_RS26605 0.50 -2.7 5,507,464 + BWI76_RS26605 0.58 -3.4
Or see this region's nucleotide sequence