Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26115 and BWI76_RS26120 overlap by 4 nucleotides BWI76_RS26120 and BWI76_RS26125 are separated by 117 nucleotides BWI76_RS26125 and BWI76_RS26130 are separated by 44 nucleotides BWI76_RS26130 and BWI76_RS26135 are separated by 331 nucleotides
BWI76_RS26115: BWI76_RS26115 - hypothetical protein, at 5,394,094 to 5,394,627
_RS26115
BWI76_RS26120: BWI76_RS26120 - hypothetical protein, at 5,394,624 to 5,395,415
_RS26120
BWI76_RS26125: BWI76_RS26125 - carboxypeptidase/penicillin-binding protein 1A, at 5,395,533 to 5,398,091
_RS26125
BWI76_RS26130: BWI76_RS26130 - ADP compounds hydrolase NudE, at 5,398,136 to 5,398,696
_RS26130
BWI76_RS26135: BWI76_RS26135 - Intracellular growth attenuator protein igaA, at 5,399,028 to 5,401,157
_RS26135
Position (kb)
5395
5396
5397
5398
5399 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5394.622 kb on + strand at 5394.664 kb on - strand at 5394.887 kb on + strand, within BWI76_RS26120 at 5395.067 kb on + strand, within BWI76_RS26120 at 5395.315 kb on - strand, within BWI76_RS26120 at 5395.322 kb on + strand, within BWI76_RS26120 at 5395.471 kb on + strand at 5395.580 kb on + strand at 5395.580 kb on + strand at 5395.588 kb on - strand at 5395.636 kb on - strand at 5395.646 kb on + strand at 5395.654 kb on + strand at 5395.734 kb on - strand at 5396.697 kb on + strand, within BWI76_RS26125 at 5396.761 kb on - strand, within BWI76_RS26125 at 5396.761 kb on - strand, within BWI76_RS26125 at 5396.779 kb on - strand, within BWI76_RS26125 at 5396.796 kb on - strand, within BWI76_RS26125 at 5396.886 kb on + strand, within BWI76_RS26125 at 5396.942 kb on + strand, within BWI76_RS26125 at 5396.950 kb on - strand, within BWI76_RS26125 at 5396.952 kb on + strand, within BWI76_RS26125 at 5396.993 kb on - strand, within BWI76_RS26125 at 5397.181 kb on + strand, within BWI76_RS26125 at 5397.488 kb on + strand, within BWI76_RS26125 at 5397.567 kb on + strand, within BWI76_RS26125 at 5397.690 kb on + strand, within BWI76_RS26125 at 5397.887 kb on + strand at 5398.484 kb on - strand, within BWI76_RS26130 at 5398.513 kb on + strand, within BWI76_RS26130 at 5398.609 kb on - strand, within BWI76_RS26130 at 5398.744 kb on + strand at 5398.891 kb on + strand at 5398.899 kb on - strand at 5398.899 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,394,622 + +0.3 5,394,664 - +0.5 5,394,887 + BWI76_RS26120 0.33 +1.2 5,395,067 + BWI76_RS26120 0.56 +0.4 5,395,315 - BWI76_RS26120 0.87 +0.9 5,395,322 + BWI76_RS26120 0.88 -0.6 5,395,471 + +2.2 5,395,580 + -1.0 5,395,580 + -0.6 5,395,588 - -2.4 5,395,636 - -2.2 5,395,646 + -1.2 5,395,654 + -0.7 5,395,734 - -1.8 5,396,697 + BWI76_RS26125 0.45 +1.2 5,396,761 - BWI76_RS26125 0.48 -1.1 5,396,761 - BWI76_RS26125 0.48 -1.7 5,396,779 - BWI76_RS26125 0.49 -1.2 5,396,796 - BWI76_RS26125 0.49 -1.4 5,396,886 + BWI76_RS26125 0.53 -0.4 5,396,942 + BWI76_RS26125 0.55 -0.7 5,396,950 - BWI76_RS26125 0.55 -2.3 5,396,952 + BWI76_RS26125 0.55 -1.7 5,396,993 - BWI76_RS26125 0.57 -1.7 5,397,181 + BWI76_RS26125 0.64 -1.9 5,397,488 + BWI76_RS26125 0.76 -1.3 5,397,567 + BWI76_RS26125 0.79 +1.4 5,397,690 + BWI76_RS26125 0.84 -0.6 5,397,887 + +0.1 5,398,484 - BWI76_RS26130 0.62 -1.7 5,398,513 + BWI76_RS26130 0.67 -2.8 5,398,609 - BWI76_RS26130 0.84 -1.6 5,398,744 + +0.8 5,398,891 + -0.2 5,398,899 - -1.0 5,398,899 - +0.7
Or see this region's nucleotide sequence