Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24880

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24875 and BWI76_RS24880 are separated by 13 nucleotidesBWI76_RS24880 and BWI76_RS24885 are separated by 26 nucleotidesBWI76_RS24885 and BWI76_RS24890 are separated by 5 nucleotides BWI76_RS24875: BWI76_RS24875 - tagatose-1,6-bisphosphate aldolase, at 5,184,025 to 5,185,296 _RS24875 BWI76_RS24880: BWI76_RS24880 - PTS galactitol transporter subunit IIA, at 5,185,310 to 5,185,777 _RS24880 BWI76_RS24885: BWI76_RS24885 - PTS galactitol transporter subunit IIB, at 5,185,804 to 5,186,088 _RS24885 BWI76_RS24890: BWI76_RS24890 - PTS system galactitol-specific transporter subunit IIC, at 5,186,094 to 5,187,467 _RS24890 Position (kb) 5185 5186Strain fitness (log2 ratio) -2 -1 0 1 2at 5184.400 kb on + strand, within BWI76_RS24875at 5184.410 kb on + strand, within BWI76_RS24875at 5184.510 kb on - strand, within BWI76_RS24875at 5184.588 kb on - strand, within BWI76_RS24875at 5184.658 kb on + strand, within BWI76_RS24875at 5184.708 kb on - strand, within BWI76_RS24875at 5184.871 kb on + strand, within BWI76_RS24875at 5184.879 kb on - strand, within BWI76_RS24875at 5184.879 kb on - strand, within BWI76_RS24875at 5185.029 kb on - strand, within BWI76_RS24875at 5185.049 kb on + strand, within BWI76_RS24875at 5185.072 kb on + strand, within BWI76_RS24875at 5185.167 kb on + strand, within BWI76_RS24875at 5185.167 kb on + strand, within BWI76_RS24875at 5185.167 kb on + strand, within BWI76_RS24875at 5185.167 kb on + strand, within BWI76_RS24875at 5185.175 kb on - strandat 5185.175 kb on - strandat 5185.175 kb on - strandat 5185.175 kb on - strandat 5185.242 kb on + strandat 5185.267 kb on + strandat 5185.437 kb on - strand, within BWI76_RS24880at 5185.495 kb on + strand, within BWI76_RS24880at 5185.495 kb on - strand, within BWI76_RS24880at 5185.644 kb on - strand, within BWI76_RS24880at 5185.837 kb on - strand, within BWI76_RS24885at 5185.965 kb on - strand, within BWI76_RS24885at 5185.991 kb on + strand, within BWI76_RS24885at 5186.091 kb on + strandat 5186.200 kb on + strandat 5186.200 kb on + strandat 5186.349 kb on - strand, within BWI76_RS24890at 5186.355 kb on + strand, within BWI76_RS24890at 5186.496 kb on + strand, within BWI76_RS24890

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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5,184,400 + BWI76_RS24875 0.29 -1.0
5,184,410 + BWI76_RS24875 0.30 -0.1
5,184,510 - BWI76_RS24875 0.38 +0.2
5,184,588 - BWI76_RS24875 0.44 +0.9
5,184,658 + BWI76_RS24875 0.50 -0.2
5,184,708 - BWI76_RS24875 0.54 +0.2
5,184,871 + BWI76_RS24875 0.67 -0.7
5,184,879 - BWI76_RS24875 0.67 -0.1
5,184,879 - BWI76_RS24875 0.67 +1.2
5,185,029 - BWI76_RS24875 0.79 -1.0
5,185,049 + BWI76_RS24875 0.81 +0.2
5,185,072 + BWI76_RS24875 0.82 -1.4
5,185,167 + BWI76_RS24875 0.90 +1.3
5,185,167 + BWI76_RS24875 0.90 -0.1
5,185,167 + BWI76_RS24875 0.90 +0.5
5,185,167 + BWI76_RS24875 0.90 -0.6
5,185,175 - -0.2
5,185,175 - -0.5
5,185,175 - -0.0
5,185,175 - -0.1
5,185,242 + +0.0
5,185,267 + +2.0
5,185,437 - BWI76_RS24880 0.27 -0.7
5,185,495 + BWI76_RS24880 0.40 -0.6
5,185,495 - BWI76_RS24880 0.40 -1.3
5,185,644 - BWI76_RS24880 0.71 -1.0
5,185,837 - BWI76_RS24885 0.12 -1.2
5,185,965 - BWI76_RS24885 0.56 +0.0
5,185,991 + BWI76_RS24885 0.66 -0.3
5,186,091 + -0.5
5,186,200 + -0.7
5,186,200 + +0.6
5,186,349 - BWI76_RS24890 0.19 -2.1
5,186,355 + BWI76_RS24890 0.19 -0.8
5,186,496 + BWI76_RS24890 0.29 -0.7

Or see this region's nucleotide sequence