Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24840 and BWI76_RS24845 are separated by 50 nucleotides BWI76_RS24845 and BWI76_RS24850 are separated by 10 nucleotides
BWI76_RS24840: BWI76_RS24840 - galactarate dehydratase, at 5,176,079 to 5,177,650
_RS24840
BWI76_RS24845: BWI76_RS24845 - PfkB domain-containing protein, at 5,177,701 to 5,178,648
_RS24845
BWI76_RS24850: BWI76_RS24850 - DeoR family transcriptional regulator, at 5,178,659 to 5,179,489
_RS24850
Position (kb)
5177
5178
5179 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5176.755 kb on - strand, within BWI76_RS24840 at 5176.841 kb on + strand, within BWI76_RS24840 at 5177.005 kb on - strand, within BWI76_RS24840 at 5177.189 kb on - strand, within BWI76_RS24840 at 5177.254 kb on - strand at 5177.277 kb on + strand, within BWI76_RS24840 at 5177.475 kb on + strand, within BWI76_RS24840 at 5177.543 kb on - strand at 5177.626 kb on + strand at 5177.632 kb on - strand at 5177.634 kb on - strand at 5177.634 kb on - strand at 5177.639 kb on + strand at 5177.831 kb on + strand, within BWI76_RS24845 at 5177.859 kb on - strand, within BWI76_RS24845 at 5177.935 kb on + strand, within BWI76_RS24845 at 5178.036 kb on + strand, within BWI76_RS24845 at 5178.221 kb on + strand, within BWI76_RS24845 at 5178.264 kb on + strand, within BWI76_RS24845 at 5178.264 kb on + strand, within BWI76_RS24845 at 5178.272 kb on - strand, within BWI76_RS24845 at 5178.288 kb on + strand, within BWI76_RS24845 at 5178.316 kb on + strand at 5178.345 kb on + strand, within BWI76_RS24845 at 5178.409 kb on - strand, within BWI76_RS24845 at 5178.656 kb on + strand at 5178.656 kb on + strand at 5178.775 kb on + strand, within BWI76_RS24850 at 5178.932 kb on + strand, within BWI76_RS24850 at 5178.972 kb on - strand, within BWI76_RS24850 at 5179.031 kb on + strand, within BWI76_RS24850 at 5179.073 kb on + strand, within BWI76_RS24850 at 5179.298 kb on + strand, within BWI76_RS24850 at 5179.299 kb on + strand, within BWI76_RS24850 at 5179.329 kb on + strand, within BWI76_RS24850 at 5179.352 kb on + strand, within BWI76_RS24850 at 5179.352 kb on + strand, within BWI76_RS24850 at 5179.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 5,176,755 - BWI76_RS24840 0.43 +2.5 5,176,841 + BWI76_RS24840 0.48 -0.3 5,177,005 - BWI76_RS24840 0.59 -0.6 5,177,189 - BWI76_RS24840 0.71 +0.6 5,177,254 - -0.1 5,177,277 + BWI76_RS24840 0.76 +0.5 5,177,475 + BWI76_RS24840 0.89 -0.4 5,177,543 - -0.6 5,177,626 + -0.8 5,177,632 - -0.2 5,177,634 - -0.3 5,177,634 - -0.3 5,177,639 + +1.0 5,177,831 + BWI76_RS24845 0.14 -1.1 5,177,859 - BWI76_RS24845 0.17 -0.3 5,177,935 + BWI76_RS24845 0.25 -1.7 5,178,036 + BWI76_RS24845 0.35 +0.6 5,178,221 + BWI76_RS24845 0.55 -1.8 5,178,264 + BWI76_RS24845 0.59 +2.1 5,178,264 + BWI76_RS24845 0.59 -0.3 5,178,272 - BWI76_RS24845 0.60 -0.2 5,178,288 + BWI76_RS24845 0.62 +1.4 5,178,316 + -0.3 5,178,345 + BWI76_RS24845 0.68 -0.9 5,178,409 - BWI76_RS24845 0.75 +0.3 5,178,656 + +1.7 5,178,656 + -0.3 5,178,775 + BWI76_RS24850 0.14 +2.5 5,178,932 + BWI76_RS24850 0.33 -3.9 5,178,972 - BWI76_RS24850 0.38 -3.0 5,179,031 + BWI76_RS24850 0.45 -3.1 5,179,073 + BWI76_RS24850 0.50 -4.0 5,179,298 + BWI76_RS24850 0.77 -2.1 5,179,299 + BWI76_RS24850 0.77 -2.2 5,179,329 + BWI76_RS24850 0.81 -1.9 5,179,352 + BWI76_RS24850 0.83 -3.6 5,179,352 + BWI76_RS24850 0.83 -0.9 5,179,493 + -2.9
Or see this region's nucleotide sequence