Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23715

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23710 and BWI76_RS23715 are separated by 135 nucleotidesBWI76_RS23715 and BWI76_RS23720 are separated by 13 nucleotides BWI76_RS23710: BWI76_RS23710 - 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data), at 4,949,048 to 4,950,238 _RS23710 BWI76_RS23715: BWI76_RS23715 - 2-deoxy-D-ribonate transporter 1 (from data), at 4,950,374 to 4,951,711 _RS23715 BWI76_RS23720: BWI76_RS23720 - calcium-binding protein, at 4,951,725 to 4,952,603 _RS23720 Position (kb) 4950 4951 4952Strain fitness (log2 ratio) -2 -1 0 1at 4949.429 kb on - strand, within BWI76_RS23710at 4949.480 kb on + strand, within BWI76_RS23710at 4949.754 kb on - strand, within BWI76_RS23710at 4949.876 kb on + strand, within BWI76_RS23710at 4950.029 kb on + strand, within BWI76_RS23710at 4950.593 kb on + strand, within BWI76_RS23715at 4950.593 kb on + strand, within BWI76_RS23715at 4950.601 kb on - strand, within BWI76_RS23715at 4950.601 kb on - strand, within BWI76_RS23715at 4950.640 kb on + strand, within BWI76_RS23715at 4950.640 kb on + strand, within BWI76_RS23715at 4950.645 kb on + strand, within BWI76_RS23715at 4951.044 kb on - strand, within BWI76_RS23715at 4951.165 kb on - strand, within BWI76_RS23715at 4951.334 kb on - strand, within BWI76_RS23715at 4951.437 kb on - strand, within BWI76_RS23715at 4951.665 kb on + strandat 4951.937 kb on + strand, within BWI76_RS23720at 4951.963 kb on - strand, within BWI76_RS23720at 4951.991 kb on - strand, within BWI76_RS23720at 4952.238 kb on + strand, within BWI76_RS23720at 4952.333 kb on - strand, within BWI76_RS23720at 4952.368 kb on - strand, within BWI76_RS23720at 4952.488 kb on - strand, within BWI76_RS23720at 4952.711 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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4,949,429 - BWI76_RS23710 0.32 -0.1
4,949,480 + BWI76_RS23710 0.36 -1.0
4,949,754 - BWI76_RS23710 0.59 +0.7
4,949,876 + BWI76_RS23710 0.70 -0.4
4,950,029 + BWI76_RS23710 0.82 +0.0
4,950,593 + BWI76_RS23715 0.16 -0.5
4,950,593 + BWI76_RS23715 0.16 -2.4
4,950,601 - BWI76_RS23715 0.17 -0.3
4,950,601 - BWI76_RS23715 0.17 +0.3
4,950,640 + BWI76_RS23715 0.20 -0.8
4,950,640 + BWI76_RS23715 0.20 +0.1
4,950,645 + BWI76_RS23715 0.20 -0.3
4,951,044 - BWI76_RS23715 0.50 +0.6
4,951,165 - BWI76_RS23715 0.59 -0.3
4,951,334 - BWI76_RS23715 0.72 -0.2
4,951,437 - BWI76_RS23715 0.79 -0.7
4,951,665 + +0.1
4,951,937 + BWI76_RS23720 0.24 -0.1
4,951,963 - BWI76_RS23720 0.27 -0.6
4,951,991 - BWI76_RS23720 0.30 -0.1
4,952,238 + BWI76_RS23720 0.58 -0.8
4,952,333 - BWI76_RS23720 0.69 -0.5
4,952,368 - BWI76_RS23720 0.73 -0.1
4,952,488 - BWI76_RS23720 0.87 -0.9
4,952,711 - +0.9

Or see this region's nucleotide sequence