Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21535

Experiment: Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS21530 and BWI76_RS21535 are separated by 164 nucleotidesBWI76_RS21535 and BWI76_RS21540 are separated by 18 nucleotides BWI76_RS21530: BWI76_RS21530 - signal recognition particle protein, at 4,507,675 to 4,509,042 _RS21530 BWI76_RS21535: BWI76_RS21535 - inner membrane protein YpjD, at 4,509,207 to 4,509,998 _RS21535 BWI76_RS21540: BWI76_RS21540 - membrane protein, at 4,510,017 to 4,511,306 _RS21540 Position (kb) 4509 4510Strain fitness (log2 ratio) -3 -2 -1 0 1at 4509.113 kb on - strandat 4509.113 kb on - strandat 4509.145 kb on + strandat 4509.160 kb on + strandat 4509.160 kb on + strandat 4509.168 kb on - strandat 4509.168 kb on - strandat 4509.232 kb on - strandat 4509.500 kb on - strand, within BWI76_RS21535at 4509.529 kb on + strand, within BWI76_RS21535at 4509.615 kb on + strand, within BWI76_RS21535at 4509.633 kb on - strand, within BWI76_RS21535at 4509.754 kb on + strand, within BWI76_RS21535at 4509.777 kb on - strand, within BWI76_RS21535at 4509.777 kb on - strand, within BWI76_RS21535at 4509.799 kb on - strand, within BWI76_RS21535at 4509.930 kb on - strandat 4509.964 kb on - strandat 4510.036 kb on - strandat 4510.073 kb on - strandat 4510.229 kb on - strand, within BWI76_RS21540at 4510.277 kb on + strand, within BWI76_RS21540at 4510.602 kb on + strand, within BWI76_RS21540at 4510.833 kb on - strand, within BWI76_RS21540at 4510.961 kb on + strand, within BWI76_RS21540at 4510.969 kb on - strand, within BWI76_RS21540

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
remove
4,509,113 - +0.2
4,509,113 - +0.9
4,509,145 + +1.5
4,509,160 + -1.0
4,509,160 + -0.9
4,509,168 - -0.8
4,509,168 - -0.0
4,509,232 - -0.2
4,509,500 - BWI76_RS21535 0.37 -0.3
4,509,529 + BWI76_RS21535 0.41 -0.0
4,509,615 + BWI76_RS21535 0.52 -1.6
4,509,633 - BWI76_RS21535 0.54 -0.6
4,509,754 + BWI76_RS21535 0.69 -2.8
4,509,777 - BWI76_RS21535 0.72 -1.7
4,509,777 - BWI76_RS21535 0.72 -0.9
4,509,799 - BWI76_RS21535 0.75 -1.8
4,509,930 - -1.8
4,509,964 - -0.1
4,510,036 - +0.9
4,510,073 - +0.6
4,510,229 - BWI76_RS21540 0.16 +0.6
4,510,277 + BWI76_RS21540 0.20 +0.8
4,510,602 + BWI76_RS21540 0.45 -0.6
4,510,833 - BWI76_RS21540 0.63 -0.5
4,510,961 + BWI76_RS21540 0.73 -0.8
4,510,969 - BWI76_RS21540 0.74 +0.1

Or see this region's nucleotide sequence