Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21080

Experiment: Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS21070 and BWI76_RS21075 are separated by 10 nucleotidesBWI76_RS21075 and BWI76_RS21080 are separated by 34 nucleotidesBWI76_RS21080 and BWI76_RS21085 are separated by 91 nucleotides BWI76_RS21070: BWI76_RS21070 - outer membrane protein assembly factor BamB, at 4,408,039 to 4,409,217 _RS21070 BWI76_RS21075: BWI76_RS21075 - membrane protein, at 4,409,228 to 4,409,848 _RS21075 BWI76_RS21080: BWI76_RS21080 - histidine--tRNA ligase, at 4,409,883 to 4,411,157 _RS21080 BWI76_RS21085: BWI76_RS21085 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin), at 4,411,249 to 4,412,370 _RS21085 Position (kb) 4409 4410 4411 4412Strain fitness (log2 ratio) -2 -1 0 1at 4409.039 kb on - strand, within BWI76_RS21070at 4409.392 kb on - strand, within BWI76_RS21075at 4409.438 kb on - strand, within BWI76_RS21075at 4409.713 kb on - strand, within BWI76_RS21075at 4409.894 kb on - strandat 4411.217 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
remove
4,409,039 - BWI76_RS21070 0.85 +1.6
4,409,392 - BWI76_RS21075 0.26 -0.4
4,409,438 - BWI76_RS21075 0.34 -1.6
4,409,713 - BWI76_RS21075 0.78 +0.7
4,409,894 - -0.2
4,411,217 - -2.6

Or see this region's nucleotide sequence