Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20710 and BWI76_RS20715 are separated by 96 nucleotides BWI76_RS20715 and BWI76_RS20720 are separated by 63 nucleotides BWI76_RS20720 and BWI76_RS20725 overlap by 14 nucleotides BWI76_RS20725 and BWI76_RS20730 are separated by 21 nucleotides
BWI76_RS20710: BWI76_RS20710 - dyp-type peroxidase family protein, at 4,331,895 to 4,332,794
_RS20710
BWI76_RS20715: BWI76_RS20715 - RpoE-regulated lipoprotein, at 4,332,891 to 4,333,466
_RS20715
BWI76_RS20720: BWI76_RS20720 - hypothetical protein, at 4,333,530 to 4,333,979
_RS20720
BWI76_RS20725: BWI76_RS20725 - GNAT family acetyltransferase, at 4,333,966 to 4,334,391
_RS20725
BWI76_RS20730: BWI76_RS20730 - hypothetical protein, at 4,334,413 to 4,334,610
_RS20730
Position (kb) 4332
4333
4334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4331.916 kb on - strand at 4332.025 kb on - strand at 4332.106 kb on + strand, within BWI76_RS20710 at 4332.157 kb on - strand, within BWI76_RS20710 at 4332.157 kb on - strand, within BWI76_RS20710 at 4332.245 kb on - strand, within BWI76_RS20710 at 4332.251 kb on + strand, within BWI76_RS20710 at 4332.392 kb on + strand, within BWI76_RS20710 at 4332.482 kb on - strand, within BWI76_RS20710 at 4333.346 kb on + strand, within BWI76_RS20715 at 4333.453 kb on - strand at 4333.570 kb on - strand at 4333.570 kb on - strand at 4333.842 kb on - strand, within BWI76_RS20720 at 4333.901 kb on - strand, within BWI76_RS20720 at 4334.034 kb on - strand, within BWI76_RS20725 at 4334.262 kb on + strand, within BWI76_RS20725 at 4334.325 kb on - strand, within BWI76_RS20725 at 4334.337 kb on + strand, within BWI76_RS20725 at 4334.345 kb on + strand, within BWI76_RS20725 at 4334.394 kb on - strand at 4334.403 kb on + strand at 4334.403 kb on - strand at 4334.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 4,331,916 - +0.6 4,332,025 - +2.5 4,332,106 + BWI76_RS20710 0.23 -2.4 4,332,157 - BWI76_RS20710 0.29 -1.4 4,332,157 - BWI76_RS20710 0.29 -1.5 4,332,245 - BWI76_RS20710 0.39 -1.6 4,332,251 + BWI76_RS20710 0.40 -3.1 4,332,392 + BWI76_RS20710 0.55 -0.4 4,332,482 - BWI76_RS20710 0.65 -1.0 4,333,346 + BWI76_RS20715 0.79 -2.1 4,333,453 - +0.3 4,333,570 - +0.9 4,333,570 - +0.3 4,333,842 - BWI76_RS20720 0.69 -0.4 4,333,901 - BWI76_RS20720 0.82 -1.2 4,334,034 - BWI76_RS20725 0.16 -0.0 4,334,262 + BWI76_RS20725 0.69 -1.1 4,334,325 - BWI76_RS20725 0.84 -0.5 4,334,337 + BWI76_RS20725 0.87 -0.1 4,334,345 + BWI76_RS20725 0.89 -1.1 4,334,394 - -0.1 4,334,403 + +1.0 4,334,403 - +0.1 4,334,420 - +0.2
Or see this region's nucleotide sequence