Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19155

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19145 and BWI76_RS19150 overlap by 4 nucleotidesBWI76_RS19150 and BWI76_RS19155 are separated by 12 nucleotidesBWI76_RS19155 and BWI76_RS19160 are separated by 714 nucleotides BWI76_RS19145: BWI76_RS19145 - formate dehydrogenase cytochrome b556 subunit, at 3,981,004 to 3,981,633 _RS19145 BWI76_RS19150: BWI76_RS19150 - formate dehydrogenase subunit beta, at 3,981,630 to 3,982,532 _RS19150 BWI76_RS19155: BWI76_RS19155 - formate dehydrogenase-N subunit alpha, at 3,982,545 to 3,985,595 _RS19155 BWI76_RS19160: BWI76_RS19160 - histidine kinase, at 3,986,310 to 3,988,217 _RS19160 Position (kb) 3982 3983 3984 3985 3986Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3982.721 kb on + strandat 3982.783 kb on - strandat 3982.820 kb on - strandat 3982.962 kb on + strand, within BWI76_RS19155at 3983.019 kb on - strand, within BWI76_RS19155at 3983.094 kb on + strand, within BWI76_RS19155at 3983.174 kb on - strand, within BWI76_RS19155at 3983.307 kb on + strand, within BWI76_RS19155at 3983.410 kb on + strand, within BWI76_RS19155at 3983.489 kb on + strand, within BWI76_RS19155at 3983.497 kb on - strand, within BWI76_RS19155at 3983.539 kb on - strand, within BWI76_RS19155at 3984.224 kb on + strand, within BWI76_RS19155at 3984.232 kb on - strand, within BWI76_RS19155at 3984.271 kb on - strand, within BWI76_RS19155at 3984.527 kb on - strand, within BWI76_RS19155at 3984.678 kb on - strand, within BWI76_RS19155at 3984.693 kb on - strand, within BWI76_RS19155at 3985.145 kb on - strand, within BWI76_RS19155at 3985.254 kb on + strand, within BWI76_RS19155at 3985.264 kb on - strand, within BWI76_RS19155at 3985.415 kb on - strandat 3985.440 kb on - strandat 3985.587 kb on + strandat 3985.590 kb on - strandat 3985.597 kb on - strandat 3985.613 kb on - strandat 3985.614 kb on - strandat 3985.734 kb on + strandat 3985.742 kb on - strandat 3985.742 kb on - strandat 3985.756 kb on + strandat 3985.756 kb on + strandat 3985.764 kb on - strandat 3985.764 kb on - strandat 3985.764 kb on - strandat 3985.798 kb on + strandat 3985.800 kb on + strandat 3985.800 kb on + strandat 3985.800 kb on + strandat 3985.800 kb on + strandat 3985.801 kb on - strandat 3985.801 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.808 kb on - strandat 3985.810 kb on + strandat 3985.810 kb on + strandat 3985.812 kb on + strandat 3985.818 kb on - strandat 3985.818 kb on - strandat 3985.818 kb on - strandat 3985.818 kb on - strandat 3985.820 kb on - strandat 3985.825 kb on + strandat 3985.831 kb on + strandat 3985.839 kb on - strandat 3985.844 kb on - strandat 3985.844 kb on - strandat 3985.854 kb on - strandat 3985.879 kb on - strandat 3985.912 kb on - strandat 3985.981 kb on + strandat 3985.998 kb on - strandat 3986.058 kb on + strandat 3986.063 kb on + strandat 3986.063 kb on + strandat 3986.063 kb on + strandat 3986.066 kb on - strandat 3986.071 kb on - strandat 3986.071 kb on - strandat 3986.073 kb on + strandat 3986.073 kb on + strandat 3986.073 kb on + strandat 3986.073 kb on + strandat 3986.073 kb on + strandat 3986.081 kb on - strandat 3986.081 kb on - strandat 3986.081 kb on - strandat 3986.101 kb on - strandat 3986.118 kb on + strandat 3986.118 kb on + strandat 3986.126 kb on - strandat 3986.126 kb on - strandat 3986.128 kb on + strandat 3986.133 kb on + strandat 3986.136 kb on - strandat 3986.136 kb on - strandat 3986.138 kb on + strandat 3986.138 kb on + strandat 3986.141 kb on - strandat 3986.146 kb on - strandat 3986.162 kb on + strandat 3986.163 kb on + strandat 3986.163 kb on + strandat 3986.168 kb on + strandat 3986.170 kb on - strandat 3986.171 kb on - strandat 3986.186 kb on + strandat 3986.187 kb on + strandat 3986.194 kb on - strandat 3986.195 kb on - strandat 3986.200 kb on + strandat 3986.218 kb on - strandat 3986.231 kb on + strandat 3986.231 kb on + strandat 3986.231 kb on + strandat 3986.231 kb on + strandat 3986.239 kb on - strandat 3986.239 kb on - strandat 3986.239 kb on - strandat 3986.239 kb on - strandat 3986.239 kb on - strandat 3986.250 kb on + strandat 3986.300 kb on + strandat 3986.308 kb on - strandat 3986.331 kb on + strandat 3986.341 kb on - strandat 3986.344 kb on - strandat 3986.353 kb on + strandat 3986.369 kb on + strandat 3986.380 kb on + strandat 3986.396 kb on - strandat 3986.400 kb on + strandat 3986.408 kb on - strandat 3986.444 kb on + strandat 3986.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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3,982,721 + +1.3
3,982,783 - +1.4
3,982,820 - +0.9
3,982,962 + BWI76_RS19155 0.14 +0.8
3,983,019 - BWI76_RS19155 0.16 +1.2
3,983,094 + BWI76_RS19155 0.18 +1.4
3,983,174 - BWI76_RS19155 0.21 +0.6
3,983,307 + BWI76_RS19155 0.25 +1.8
3,983,410 + BWI76_RS19155 0.28 +1.0
3,983,489 + BWI76_RS19155 0.31 +0.1
3,983,497 - BWI76_RS19155 0.31 +0.0
3,983,539 - BWI76_RS19155 0.33 +1.9
3,984,224 + BWI76_RS19155 0.55 +0.8
3,984,232 - BWI76_RS19155 0.55 +0.8
3,984,271 - BWI76_RS19155 0.57 +1.5
3,984,527 - BWI76_RS19155 0.65 +1.2
3,984,678 - BWI76_RS19155 0.70 +1.2
3,984,693 - BWI76_RS19155 0.70 +0.9
3,985,145 - BWI76_RS19155 0.85 +1.6
3,985,254 + BWI76_RS19155 0.89 +1.3
3,985,264 - BWI76_RS19155 0.89 -0.0
3,985,415 - +0.8
3,985,440 - +3.6
3,985,587 + +1.7
3,985,590 - +0.3
3,985,597 - +0.9
3,985,613 - +0.6
3,985,614 - +0.1
3,985,734 + +0.0
3,985,742 - +2.0
3,985,742 - +0.0
3,985,756 + +0.3
3,985,756 + +0.2
3,985,764 - +1.1
3,985,764 - -0.6
3,985,764 - +0.8
3,985,798 + -0.2
3,985,800 + -0.2
3,985,800 + +0.7
3,985,800 + +0.0
3,985,800 + -2.0
3,985,801 - -0.9
3,985,801 - +0.1
3,985,808 - +0.7
3,985,808 - +0.8
3,985,808 - +2.1
3,985,808 - +2.0
3,985,808 - +0.2
3,985,808 - -0.6
3,985,808 - +0.3
3,985,808 - -0.3
3,985,808 - +1.3
3,985,808 - -2.5
3,985,808 - -0.2
3,985,810 + -0.4
3,985,810 + -0.6
3,985,812 + -0.6
3,985,818 - +1.7
3,985,818 - -1.0
3,985,818 - +0.6
3,985,818 - -0.4
3,985,820 - -0.3
3,985,825 + +0.9
3,985,831 + +2.6
3,985,839 - -1.9
3,985,844 - -0.6
3,985,844 - +0.6
3,985,854 - -0.1
3,985,879 - -0.9
3,985,912 - -1.5
3,985,981 + -0.4
3,985,998 - -0.2
3,986,058 + +0.2
3,986,063 + -0.3
3,986,063 + -0.0
3,986,063 + -0.7
3,986,066 - -0.5
3,986,071 - -0.3
3,986,071 - +0.9
3,986,073 + +1.3
3,986,073 + +0.3
3,986,073 + +0.4
3,986,073 + -1.0
3,986,073 + -1.2
3,986,081 - -1.0
3,986,081 - +0.4
3,986,081 - +1.2
3,986,101 - -1.4
3,986,118 + +1.0
3,986,118 + +0.2
3,986,126 - +1.6
3,986,126 - -0.6
3,986,128 + +0.3
3,986,133 + -0.9
3,986,136 - -0.1
3,986,136 - -1.4
3,986,138 + -0.5
3,986,138 + -0.0
3,986,141 - -0.2
3,986,146 - +0.3
3,986,162 + -0.3
3,986,163 + -0.4
3,986,163 + -0.7
3,986,168 + +0.6
3,986,170 - -1.9
3,986,171 - +0.3
3,986,186 + -0.8
3,986,187 + -3.2
3,986,194 - +0.4
3,986,195 - +2.3
3,986,200 + +1.0
3,986,218 - -0.1
3,986,231 + -0.5
3,986,231 + +0.0
3,986,231 + +0.6
3,986,231 + +1.0
3,986,239 - +0.5
3,986,239 - +0.0
3,986,239 - -0.1
3,986,239 - +0.6
3,986,239 - -0.4
3,986,250 + -1.6
3,986,300 + +0.0
3,986,308 - -0.2
3,986,331 + -1.4
3,986,341 - +0.9
3,986,344 - -1.6
3,986,353 + -0.1
3,986,369 + -0.6
3,986,380 + -0.7
3,986,396 - -0.5
3,986,400 + -0.8
3,986,408 - -0.1
3,986,444 + -0.6
3,986,454 - -0.3

Or see this region's nucleotide sequence