Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18520 and BWI76_RS18525 are separated by 106 nucleotides BWI76_RS18525 and BWI76_RS18530 are separated by 227 nucleotides BWI76_RS18530 and BWI76_RS18535 overlap by 9 nucleotides
BWI76_RS18520: BWI76_RS18520 - hypothetical protein, at 3,843,546 to 3,844,511
_RS18520
BWI76_RS18525: BWI76_RS18525 - phospholipid:lipid A palmitoyltransferase, at 3,844,618 to 3,845,193
_RS18525
BWI76_RS18530: BWI76_RS18530 - hypothetical protein, at 3,845,421 to 3,846,353
_RS18530
BWI76_RS18535: BWI76_RS18535 - alpha/beta hydrolase, at 3,846,345 to 3,847,886
_RS18535
Position (kb)
3845
3846
3847 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3844.544 kb on - strand at 3844.546 kb on + strand at 3844.687 kb on + strand, within BWI76_RS18525 at 3844.880 kb on + strand, within BWI76_RS18525 at 3844.880 kb on + strand, within BWI76_RS18525 at 3844.888 kb on - strand, within BWI76_RS18525 at 3844.888 kb on - strand, within BWI76_RS18525 at 3844.888 kb on - strand, within BWI76_RS18525 at 3844.888 kb on - strand, within BWI76_RS18525 at 3844.898 kb on - strand, within BWI76_RS18525 at 3844.907 kb on + strand, within BWI76_RS18525 at 3844.915 kb on - strand, within BWI76_RS18525 at 3844.923 kb on + strand, within BWI76_RS18525 at 3845.060 kb on - strand, within BWI76_RS18525 at 3845.060 kb on - strand, within BWI76_RS18525 at 3845.086 kb on + strand, within BWI76_RS18525 at 3845.183 kb on - strand at 3845.195 kb on + strand at 3845.203 kb on - strand at 3845.203 kb on - strand at 3845.203 kb on - strand at 3845.203 kb on - strand at 3845.203 kb on - strand at 3845.286 kb on + strand at 3845.287 kb on + strand at 3845.294 kb on - strand at 3845.322 kb on + strand at 3845.322 kb on + strand at 3845.322 kb on + strand at 3845.322 kb on + strand at 3845.322 kb on + strand at 3845.328 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.330 kb on - strand at 3845.541 kb on + strand, within BWI76_RS18530 at 3845.546 kb on + strand, within BWI76_RS18530 at 3845.584 kb on - strand, within BWI76_RS18530 at 3845.608 kb on + strand, within BWI76_RS18530 at 3845.704 kb on + strand, within BWI76_RS18530 at 3845.728 kb on - strand, within BWI76_RS18530 at 3845.886 kb on + strand, within BWI76_RS18530 at 3845.891 kb on + strand, within BWI76_RS18530 at 3845.899 kb on - strand, within BWI76_RS18530 at 3845.964 kb on + strand, within BWI76_RS18530 at 3845.982 kb on + strand, within BWI76_RS18530 at 3846.101 kb on + strand, within BWI76_RS18530 at 3846.194 kb on - strand, within BWI76_RS18530 at 3846.223 kb on + strand, within BWI76_RS18530 at 3846.271 kb on + strand at 3846.477 kb on - strand at 3846.634 kb on + strand, within BWI76_RS18535 at 3846.928 kb on + strand, within BWI76_RS18535
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 3,844,544 - +0.5 3,844,546 + -0.8 3,844,687 + BWI76_RS18525 0.12 -1.7 3,844,880 + BWI76_RS18525 0.45 -1.0 3,844,880 + BWI76_RS18525 0.45 -0.0 3,844,888 - BWI76_RS18525 0.47 -0.7 3,844,888 - BWI76_RS18525 0.47 -0.6 3,844,888 - BWI76_RS18525 0.47 +0.4 3,844,888 - BWI76_RS18525 0.47 +1.5 3,844,898 - BWI76_RS18525 0.49 -0.6 3,844,907 + BWI76_RS18525 0.50 -0.2 3,844,915 - BWI76_RS18525 0.52 +0.9 3,844,923 + BWI76_RS18525 0.53 +2.4 3,845,060 - BWI76_RS18525 0.77 +0.5 3,845,060 - BWI76_RS18525 0.77 -0.6 3,845,086 + BWI76_RS18525 0.81 -1.9 3,845,183 - +0.3 3,845,195 + +0.5 3,845,203 - +0.3 3,845,203 - -1.1 3,845,203 - -0.3 3,845,203 - -2.7 3,845,203 - -1.2 3,845,286 + +0.4 3,845,287 + +0.5 3,845,294 - -0.0 3,845,322 + -0.6 3,845,322 + -0.7 3,845,322 + -3.0 3,845,322 + -0.7 3,845,322 + -0.1 3,845,328 - +0.4 3,845,330 - -2.3 3,845,330 - -1.7 3,845,330 - +0.2 3,845,330 - -0.4 3,845,330 - +1.6 3,845,330 - +1.6 3,845,330 - +0.4 3,845,541 + BWI76_RS18530 0.13 +1.0 3,845,546 + BWI76_RS18530 0.13 -0.1 3,845,584 - BWI76_RS18530 0.17 -0.5 3,845,608 + BWI76_RS18530 0.20 -1.5 3,845,704 + BWI76_RS18530 0.30 -1.1 3,845,728 - BWI76_RS18530 0.33 +0.0 3,845,886 + BWI76_RS18530 0.50 -0.7 3,845,891 + BWI76_RS18530 0.50 -0.4 3,845,899 - BWI76_RS18530 0.51 -2.7 3,845,964 + BWI76_RS18530 0.58 -1.1 3,845,982 + BWI76_RS18530 0.60 +0.2 3,846,101 + BWI76_RS18530 0.73 -0.1 3,846,194 - BWI76_RS18530 0.83 -2.3 3,846,223 + BWI76_RS18530 0.86 -0.1 3,846,271 + +0.0 3,846,477 - -0.3 3,846,634 + BWI76_RS18535 0.19 -3.0 3,846,928 + BWI76_RS18535 0.38 +0.3
Or see this region's nucleotide sequence