Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16670

Experiment: Sisomicin 0.008 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16660 and BWI76_RS16665 are separated by 1 nucleotidesBWI76_RS16665 and BWI76_RS16670 are separated by 22 nucleotidesBWI76_RS16670 and BWI76_RS16675 are separated by 62 nucleotides BWI76_RS16660: BWI76_RS16660 - SfnB family sulfur acquisition oxidoreductase, at 3,447,939 to 3,449,162 _RS16660 BWI76_RS16665: BWI76_RS16665 - ABC transporter permease, at 3,449,164 to 3,449,838 _RS16665 BWI76_RS16670: BWI76_RS16670 - NLPA lipoprotein, at 3,449,861 to 3,450,637 _RS16670 BWI76_RS16675: BWI76_RS16675 - ABC transporter, at 3,450,700 to 3,451,746 _RS16675 Position (kb) 3449 3450 3451Strain fitness (log2 ratio) -1 0 1at 3448.958 kb on + strand, within BWI76_RS16660at 3449.066 kb on + strandat 3449.513 kb on - strand, within BWI76_RS16665at 3449.537 kb on + strand, within BWI76_RS16665at 3449.538 kb on - strand, within BWI76_RS16665at 3449.712 kb on - strand, within BWI76_RS16665at 3449.880 kb on + strandat 3450.033 kb on + strand, within BWI76_RS16670at 3450.041 kb on - strand, within BWI76_RS16670at 3450.124 kb on - strand, within BWI76_RS16670at 3450.255 kb on - strand, within BWI76_RS16670at 3450.465 kb on + strand, within BWI76_RS16670at 3450.581 kb on - strandat 3450.591 kb on + strandat 3450.761 kb on - strandat 3450.767 kb on - strandat 3451.022 kb on + strand, within BWI76_RS16675at 3451.310 kb on + strand, within BWI76_RS16675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
remove
3,448,958 + BWI76_RS16660 0.83 -0.4
3,449,066 + -0.5
3,449,513 - BWI76_RS16665 0.52 -0.2
3,449,537 + BWI76_RS16665 0.55 +0.8
3,449,538 - BWI76_RS16665 0.55 -0.9
3,449,712 - BWI76_RS16665 0.81 -0.4
3,449,880 + -0.4
3,450,033 + BWI76_RS16670 0.22 +0.8
3,450,041 - BWI76_RS16670 0.23 -0.0
3,450,124 - BWI76_RS16670 0.34 -0.3
3,450,255 - BWI76_RS16670 0.51 -0.7
3,450,465 + BWI76_RS16670 0.78 -0.4
3,450,581 - +0.0
3,450,591 + -0.2
3,450,761 - -0.2
3,450,767 - -0.1
3,451,022 + BWI76_RS16675 0.31 -1.0
3,451,310 + BWI76_RS16675 0.58 -0.9

Or see this region's nucleotide sequence