Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16320

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16310 and BWI76_RS16315 overlap by 4 nucleotidesBWI76_RS16315 and BWI76_RS16320 are separated by 77 nucleotidesBWI76_RS16320 and BWI76_RS16325 are separated by 272 nucleotides BWI76_RS16310: BWI76_RS16310 - hypothetical protein, at 3,386,065 to 3,387,276 _RS16310 BWI76_RS16315: BWI76_RS16315 - SirA-like protein, at 3,387,273 to 3,387,506 _RS16315 BWI76_RS16320: BWI76_RS16320 - methionine ABC transporter substrate-binding protein, at 3,387,584 to 3,388,396 _RS16320 BWI76_RS16325: BWI76_RS16325 - adenosine deaminase, at 3,388,669 to 3,389,670 _RS16325 Position (kb) 3387 3388 3389Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3387.081 kb on + strand, within BWI76_RS16310at 3387.098 kb on + strand, within BWI76_RS16310at 3387.098 kb on + strand, within BWI76_RS16310at 3387.143 kb on + strand, within BWI76_RS16310at 3387.445 kb on + strand, within BWI76_RS16315at 3387.455 kb on + strand, within BWI76_RS16315at 3388.085 kb on - strand, within BWI76_RS16320at 3388.101 kb on - strand, within BWI76_RS16320at 3388.101 kb on - strandat 3388.136 kb on + strand, within BWI76_RS16320at 3388.187 kb on - strand, within BWI76_RS16320at 3388.187 kb on - strand, within BWI76_RS16320at 3388.187 kb on - strand, within BWI76_RS16320at 3388.219 kb on + strand, within BWI76_RS16320at 3388.314 kb on - strand, within BWI76_RS16320at 3388.500 kb on + strandat 3388.539 kb on + strandat 3388.577 kb on + strandat 3388.585 kb on - strandat 3388.585 kb on - strandat 3388.585 kb on - strandat 3388.629 kb on - strandat 3388.637 kb on - strandat 3388.700 kb on + strandat 3388.813 kb on - strand, within BWI76_RS16325at 3388.852 kb on + strand, within BWI76_RS16325at 3388.873 kb on - strand, within BWI76_RS16325at 3388.944 kb on + strand, within BWI76_RS16325at 3389.252 kb on - strand, within BWI76_RS16325

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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3,387,081 + BWI76_RS16310 0.84 +1.1
3,387,098 + BWI76_RS16310 0.85 +2.0
3,387,098 + BWI76_RS16310 0.85 +0.4
3,387,143 + BWI76_RS16310 0.89 -0.9
3,387,445 + BWI76_RS16315 0.74 -0.3
3,387,455 + BWI76_RS16315 0.78 +0.7
3,388,085 - BWI76_RS16320 0.62 +0.0
3,388,101 - BWI76_RS16320 0.64 +2.7
3,388,101 - +1.1
3,388,136 + BWI76_RS16320 0.68 -1.1
3,388,187 - BWI76_RS16320 0.74 -0.6
3,388,187 - BWI76_RS16320 0.74 +0.2
3,388,187 - BWI76_RS16320 0.74 -0.9
3,388,219 + BWI76_RS16320 0.78 -1.2
3,388,314 - BWI76_RS16320 0.90 -0.4
3,388,500 + +1.6
3,388,539 + +0.1
3,388,577 + +0.0
3,388,585 - +0.3
3,388,585 - -0.3
3,388,585 - -0.6
3,388,629 - -0.1
3,388,637 - -0.1
3,388,700 + -3.5
3,388,813 - BWI76_RS16325 0.14 -0.8
3,388,852 + BWI76_RS16325 0.18 -1.0
3,388,873 - BWI76_RS16325 0.20 +1.1
3,388,944 + BWI76_RS16325 0.27 -0.1
3,389,252 - BWI76_RS16325 0.58 +0.6

Or see this region's nucleotide sequence