Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15900 and BWI76_RS15905 are separated by 136 nucleotides BWI76_RS15905 and BWI76_RS15910 are separated by 60 nucleotides BWI76_RS15910 and BWI76_RS15915 overlap by 7 nucleotides BWI76_RS15915 and BWI76_RS15920 are separated by 102 nucleotides
BWI76_RS15900: BWI76_RS15900 - hypothetical protein, at 3,299,628 to 3,299,953
_RS15900
BWI76_RS15905: BWI76_RS15905 - hypothetical protein, at 3,300,090 to 3,300,431
_RS15905
BWI76_RS15910: BWI76_RS15910 - spermidine acetyltransferase, at 3,300,492 to 3,301,052
_RS15910
BWI76_RS15915: BWI76_RS15915 - YnfC family lipoprotein, at 3,301,046 to 3,301,756
_RS15915
BWI76_RS15920: BWI76_RS15920 - hypothetical protein, at 3,301,859 to 3,302,110
_RS15920
Position (kb)
3300
3301
3302 Strain fitness (log2 ratio)
-2
-1
0
1 at 3299.536 kb on - strand at 3299.569 kb on - strand at 3299.633 kb on - strand at 3299.744 kb on - strand, within BWI76_RS15900 at 3299.781 kb on - strand, within BWI76_RS15900 at 3300.394 kb on + strand, within BWI76_RS15905 at 3300.402 kb on - strand at 3300.402 kb on - strand at 3300.545 kb on - strand at 3300.545 kb on - strand at 3300.847 kb on + strand, within BWI76_RS15910 at 3301.015 kb on - strand at 3301.038 kb on + strand at 3301.082 kb on - strand at 3301.114 kb on - strand at 3301.123 kb on + strand, within BWI76_RS15915 at 3301.234 kb on + strand, within BWI76_RS15915 at 3301.677 kb on + strand, within BWI76_RS15915 at 3301.689 kb on + strand at 3301.702 kb on + strand at 3301.779 kb on - strand at 3301.871 kb on + strand at 3301.887 kb on - strand, within BWI76_RS15920
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 3,299,536 - +0.5 3,299,569 - +0.3 3,299,633 - -0.1 3,299,744 - BWI76_RS15900 0.36 +0.4 3,299,781 - BWI76_RS15900 0.47 +1.0 3,300,394 + BWI76_RS15905 0.89 +0.5 3,300,402 - +0.3 3,300,402 - +1.3 3,300,545 - -0.3 3,300,545 - +0.1 3,300,847 + BWI76_RS15910 0.63 +0.9 3,301,015 - -0.7 3,301,038 + -0.4 3,301,082 - +0.2 3,301,114 - -0.1 3,301,123 + BWI76_RS15915 0.11 -0.1 3,301,234 + BWI76_RS15915 0.26 -0.7 3,301,677 + BWI76_RS15915 0.89 +0.2 3,301,689 + -0.5 3,301,702 + -0.2 3,301,779 - -1.9 3,301,871 + +1.2 3,301,887 - BWI76_RS15920 0.11 -0.8
Or see this region's nucleotide sequence