Experiment: Sisomicin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13415 and BWI76_RS13420 overlap by 11 nucleotides BWI76_RS13420 and BWI76_RS13425 are separated by 22 nucleotides
BWI76_RS13415: BWI76_RS13415 - spermidine/putrescine ABC transporter permease, at 2,798,280 to 2,799,209
_RS13415
BWI76_RS13420: BWI76_RS13420 - ABC transporter permease, at 2,799,199 to 2,800,005
_RS13420
BWI76_RS13425: BWI76_RS13425 - 1-pyrroline dehydrogenase, at 2,800,028 to 2,801,455
_RS13425
Position (kb)
2800
2801
2802 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2799.088 kb on + strand, within BWI76_RS13415 at 2799.296 kb on - strand, within BWI76_RS13420 at 2799.351 kb on + strand, within BWI76_RS13420 at 2800.018 kb on + strand at 2800.059 kb on - strand at 2800.147 kb on + strand at 2800.309 kb on - strand, within BWI76_RS13425 at 2800.758 kb on + strand, within BWI76_RS13425 at 2800.823 kb on - strand, within BWI76_RS13425 at 2800.846 kb on + strand, within BWI76_RS13425 at 2800.890 kb on - strand, within BWI76_RS13425 at 2801.218 kb on - strand, within BWI76_RS13425 at 2801.263 kb on - strand, within BWI76_RS13425 at 2801.389 kb on + strand at 2801.413 kb on + strand at 2801.576 kb on + strand at 2801.689 kb on + strand at 2801.696 kb on - strand at 2801.722 kb on - strand at 2801.746 kb on + strand at 2801.746 kb on + strand at 2801.750 kb on - strand at 2801.855 kb on - strand at 2802.065 kb on - strand at 2802.194 kb on - strand at 2802.210 kb on + strand at 2802.210 kb on + strand at 2802.210 kb on + strand at 2802.210 kb on + strand at 2802.210 kb on + strand at 2802.218 kb on - strand at 2802.218 kb on - strand at 2802.218 kb on - strand at 2802.218 kb on - strand at 2802.232 kb on + strand at 2802.245 kb on + strand at 2802.245 kb on + strand at 2802.245 kb on + strand at 2802.253 kb on - strand at 2802.260 kb on - strand at 2802.265 kb on + strand at 2802.265 kb on + strand at 2802.273 kb on - strand at 2802.405 kb on + strand at 2802.406 kb on - strand at 2802.406 kb on - strand at 2802.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml remove 2,799,088 + BWI76_RS13415 0.87 -1.4 2,799,296 - BWI76_RS13420 0.12 -1.1 2,799,351 + BWI76_RS13420 0.19 -1.0 2,800,018 + +0.3 2,800,059 - +0.7 2,800,147 + -0.2 2,800,309 - BWI76_RS13425 0.20 -0.4 2,800,758 + BWI76_RS13425 0.51 -2.7 2,800,823 - BWI76_RS13425 0.56 -0.9 2,800,846 + BWI76_RS13425 0.57 +0.1 2,800,890 - BWI76_RS13425 0.60 -0.7 2,801,218 - BWI76_RS13425 0.83 -0.4 2,801,263 - BWI76_RS13425 0.86 -2.2 2,801,389 + -0.7 2,801,413 + -1.9 2,801,576 + -2.8 2,801,689 + -1.7 2,801,696 - +0.0 2,801,722 - -1.3 2,801,746 + +0.7 2,801,746 + +1.1 2,801,750 - +1.1 2,801,855 - -2.2 2,802,065 - -1.7 2,802,194 - -0.0 2,802,210 + -3.2 2,802,210 + +0.5 2,802,210 + -0.5 2,802,210 + +1.0 2,802,210 + +0.7 2,802,218 - -2.1 2,802,218 - -3.0 2,802,218 - -1.6 2,802,218 - +0.8 2,802,232 + -1.1 2,802,245 + -1.4 2,802,245 + -0.9 2,802,245 + -1.1 2,802,253 - +0.5 2,802,260 - +2.7 2,802,265 + +0.7 2,802,265 + -1.6 2,802,273 - +1.1 2,802,405 + +0.6 2,802,406 - +1.8 2,802,406 - +1.0 2,802,455 - -0.3
Or see this region's nucleotide sequence