Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11585

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11580 and BWI76_RS11585 are separated by 94 nucleotidesBWI76_RS11585 and BWI76_RS11590 are separated by 166 nucleotidesBWI76_RS11590 and BWI76_RS11595 are separated by 164 nucleotides BWI76_RS11580: BWI76_RS11580 - L-asparaginase 1, at 2,436,157 to 2,437,173 _RS11580 BWI76_RS11585: BWI76_RS11585 - signal peptide peptidase A, at 2,437,268 to 2,439,121 _RS11585 BWI76_RS11590: BWI76_RS11590 - NAD(P)H nitroreductase, at 2,439,288 to 2,439,839 _RS11590 BWI76_RS11595: BWI76_RS11595 - acid phosphatase, at 2,440,004 to 2,440,750 _RS11595 Position (kb) 2437 2438 2439 2440Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2436.375 kb on + strand, within BWI76_RS11580at 2436.931 kb on - strand, within BWI76_RS11580at 2437.185 kb on + strandat 2437.206 kb on + strandat 2437.206 kb on + strandat 2437.206 kb on + strandat 2437.209 kb on - strandat 2437.214 kb on - strandat 2438.247 kb on + strand, within BWI76_RS11585at 2438.498 kb on + strand, within BWI76_RS11585at 2438.511 kb on + strand, within BWI76_RS11585at 2438.721 kb on + strand, within BWI76_RS11585at 2438.829 kb on - strand, within BWI76_RS11585at 2439.183 kb on - strandat 2439.287 kb on + strandat 2439.308 kb on + strandat 2439.338 kb on - strandat 2439.574 kb on + strand, within BWI76_RS11590

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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2,436,375 + BWI76_RS11580 0.21 +0.9
2,436,931 - BWI76_RS11580 0.76 +1.3
2,437,185 + +1.8
2,437,206 + +0.3
2,437,206 + +0.0
2,437,206 + +1.6
2,437,209 - +1.5
2,437,214 - +1.4
2,438,247 + BWI76_RS11585 0.53 -4.0
2,438,498 + BWI76_RS11585 0.66 -1.4
2,438,511 + BWI76_RS11585 0.67 -3.0
2,438,721 + BWI76_RS11585 0.78 -2.3
2,438,829 - BWI76_RS11585 0.84 -2.6
2,439,183 - +0.7
2,439,287 + +0.2
2,439,308 + +0.4
2,439,338 - +0.4
2,439,574 + BWI76_RS11590 0.52 +1.0

Or see this region's nucleotide sequence