Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10305

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10300 and BWI76_RS10305 are separated by 167 nucleotidesBWI76_RS10305 and BWI76_RS10310 are separated by 100 nucleotidesBWI76_RS10310 and BWI76_RS10315 are separated by 201 nucleotides BWI76_RS10300: BWI76_RS10300 - MFS transporter, at 2,180,727 to 2,182,163 _RS10300 BWI76_RS10305: BWI76_RS10305 - transposase, at 2,182,331 to 2,182,927 _RS10305 BWI76_RS10310: BWI76_RS10310 - DNA-binding transcriptional regulator RamA, at 2,183,028 to 2,183,372 _RS10310 BWI76_RS10315: BWI76_RS10315 - MFS transporter, at 2,183,574 to 2,184,866 _RS10315 Position (kb) 2182 2183Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2181.390 kb on + strand, within BWI76_RS10300at 2181.390 kb on + strand, within BWI76_RS10300at 2181.508 kb on - strand, within BWI76_RS10300at 2181.516 kb on + strand, within BWI76_RS10300at 2181.586 kb on - strand, within BWI76_RS10300at 2181.598 kb on - strand, within BWI76_RS10300at 2181.844 kb on + strand, within BWI76_RS10300at 2181.950 kb on - strand, within BWI76_RS10300at 2182.024 kb on - strandat 2182.246 kb on - strandat 2182.410 kb on + strand, within BWI76_RS10305at 2182.495 kb on + strand, within BWI76_RS10305at 2182.622 kb on + strand, within BWI76_RS10305at 2182.622 kb on + strand, within BWI76_RS10305at 2182.640 kb on + strand, within BWI76_RS10305at 2182.651 kb on + strand, within BWI76_RS10305at 2182.681 kb on + strand, within BWI76_RS10305at 2182.681 kb on + strand, within BWI76_RS10305at 2182.681 kb on + strand, within BWI76_RS10305at 2182.705 kb on + strand, within BWI76_RS10305at 2182.705 kb on + strand, within BWI76_RS10305at 2182.711 kb on + strand, within BWI76_RS10305at 2182.751 kb on + strand, within BWI76_RS10305at 2182.751 kb on + strand, within BWI76_RS10305at 2182.772 kb on + strand, within BWI76_RS10305at 2182.930 kb on - strandat 2182.930 kb on - strandat 2182.943 kb on + strandat 2183.093 kb on + strand, within BWI76_RS10310at 2183.098 kb on + strand, within BWI76_RS10310at 2183.098 kb on + strand, within BWI76_RS10310at 2183.098 kb on + strand, within BWI76_RS10310at 2183.166 kb on + strand, within BWI76_RS10310at 2183.170 kb on - strand, within BWI76_RS10310at 2183.183 kb on + strand, within BWI76_RS10310at 2183.183 kb on - strand, within BWI76_RS10310at 2183.262 kb on - strand, within BWI76_RS10310at 2183.272 kb on + strand, within BWI76_RS10310at 2183.272 kb on + strand, within BWI76_RS10310at 2183.280 kb on - strand, within BWI76_RS10310at 2183.280 kb on - strand, within BWI76_RS10310at 2183.280 kb on - strand, within BWI76_RS10310at 2183.291 kb on - strand, within BWI76_RS10310at 2183.291 kb on - strand, within BWI76_RS10310at 2183.384 kb on - strandat 2183.390 kb on + strandat 2183.397 kb on + strandat 2183.398 kb on - strandat 2183.405 kb on - strandat 2183.405 kb on - strandat 2183.405 kb on - strandat 2183.405 kb on - strandat 2183.406 kb on + strandat 2183.444 kb on + strandat 2183.452 kb on - strandat 2183.465 kb on + strandat 2183.473 kb on - strandat 2183.473 kb on - strandat 2183.473 kb on - strandat 2183.473 kb on - strandat 2183.473 kb on - strandat 2183.473 kb on - strandat 2183.473 kb on - strandat 2183.572 kb on + strandat 2183.580 kb on - strandat 2183.659 kb on + strandat 2183.702 kb on - strandat 2183.702 kb on - strandat 2183.720 kb on + strand, within BWI76_RS10315at 2183.728 kb on - strand, within BWI76_RS10315at 2183.759 kb on - strand, within BWI76_RS10315at 2183.770 kb on - strand, within BWI76_RS10315at 2183.777 kb on - strand, within BWI76_RS10315at 2183.777 kb on - strand, within BWI76_RS10315at 2183.777 kb on - strand, within BWI76_RS10315at 2183.777 kb on - strand, within BWI76_RS10315at 2183.782 kb on + strand, within BWI76_RS10315at 2183.790 kb on - strand, within BWI76_RS10315at 2183.839 kb on + strand, within BWI76_RS10315at 2183.839 kb on + strand, within BWI76_RS10315at 2183.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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2,181,390 + BWI76_RS10300 0.46 -1.1
2,181,390 + BWI76_RS10300 0.46 -0.6
2,181,508 - BWI76_RS10300 0.54 +0.5
2,181,516 + BWI76_RS10300 0.55 -1.0
2,181,586 - BWI76_RS10300 0.60 +0.8
2,181,598 - BWI76_RS10300 0.61 -0.8
2,181,844 + BWI76_RS10300 0.78 -0.4
2,181,950 - BWI76_RS10300 0.85 -1.1
2,182,024 - +0.3
2,182,246 - -1.6
2,182,410 + BWI76_RS10305 0.13 -1.5
2,182,495 + BWI76_RS10305 0.27 -0.8
2,182,622 + BWI76_RS10305 0.49 -4.7
2,182,622 + BWI76_RS10305 0.49 -3.9
2,182,640 + BWI76_RS10305 0.52 -2.2
2,182,651 + BWI76_RS10305 0.54 -2.7
2,182,681 + BWI76_RS10305 0.59 -3.0
2,182,681 + BWI76_RS10305 0.59 -2.1
2,182,681 + BWI76_RS10305 0.59 -1.4
2,182,705 + BWI76_RS10305 0.63 -3.0
2,182,705 + BWI76_RS10305 0.63 -4.3
2,182,711 + BWI76_RS10305 0.64 -5.2
2,182,751 + BWI76_RS10305 0.70 -2.5
2,182,751 + BWI76_RS10305 0.70 -3.5
2,182,772 + BWI76_RS10305 0.74 -2.4
2,182,930 - -1.1
2,182,930 - +2.6
2,182,943 + -1.0
2,183,093 + BWI76_RS10310 0.19 +0.2
2,183,098 + BWI76_RS10310 0.20 +0.1
2,183,098 + BWI76_RS10310 0.20 +1.2
2,183,098 + BWI76_RS10310 0.20 +1.4
2,183,166 + BWI76_RS10310 0.40 -0.5
2,183,170 - BWI76_RS10310 0.41 +0.2
2,183,183 + BWI76_RS10310 0.45 -0.7
2,183,183 - BWI76_RS10310 0.45 -0.5
2,183,262 - BWI76_RS10310 0.68 -0.5
2,183,272 + BWI76_RS10310 0.71 -1.6
2,183,272 + BWI76_RS10310 0.71 -1.1
2,183,280 - BWI76_RS10310 0.73 +1.0
2,183,280 - BWI76_RS10310 0.73 +0.0
2,183,280 - BWI76_RS10310 0.73 -1.1
2,183,291 - BWI76_RS10310 0.76 -1.1
2,183,291 - BWI76_RS10310 0.76 +1.0
2,183,384 - -0.6
2,183,390 + -1.5
2,183,397 + -2.1
2,183,398 - -1.0
2,183,405 - -0.0
2,183,405 - +1.7
2,183,405 - +0.6
2,183,405 - -0.4
2,183,406 + -0.2
2,183,444 + +1.2
2,183,452 - -0.8
2,183,465 + +0.0
2,183,473 - -1.5
2,183,473 - -0.4
2,183,473 - +1.0
2,183,473 - -1.3
2,183,473 - -0.6
2,183,473 - +1.7
2,183,473 - -0.2
2,183,572 + -1.6
2,183,580 - +0.4
2,183,659 + +0.0
2,183,702 - +2.0
2,183,702 - +1.8
2,183,720 + BWI76_RS10315 0.11 -1.5
2,183,728 - BWI76_RS10315 0.12 +1.5
2,183,759 - BWI76_RS10315 0.14 -1.0
2,183,770 - BWI76_RS10315 0.15 -0.1
2,183,777 - BWI76_RS10315 0.16 -1.5
2,183,777 - BWI76_RS10315 0.16 +0.9
2,183,777 - BWI76_RS10315 0.16 -0.4
2,183,777 - BWI76_RS10315 0.16 -1.5
2,183,782 + BWI76_RS10315 0.16 -1.1
2,183,790 - BWI76_RS10315 0.17 -1.8
2,183,839 + BWI76_RS10315 0.20 -0.1
2,183,839 + BWI76_RS10315 0.20 -1.0
2,183,847 - +0.0

Or see this region's nucleotide sequence