Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09845

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09835 and BWI76_RS09840 overlap by 20 nucleotidesBWI76_RS09840 and BWI76_RS09845 overlap by 1 nucleotidesBWI76_RS09845 and BWI76_RS09850 are separated by 183 nucleotides BWI76_RS09835: BWI76_RS09835 - chromosome partition protein MukF, at 2,062,810 to 2,064,132 _RS09835 BWI76_RS09840: BWI76_RS09840 - condensin subunit E, at 2,064,113 to 2,064,817 _RS09840 BWI76_RS09845: BWI76_RS09845 - chromosome partition protein MukB, at 2,064,817 to 2,069,265 _RS09845 BWI76_RS09850: BWI76_RS09850 - L,D-transpeptidase, at 2,069,449 to 2,071,242 _RS09850 Position (kb) 2064 2065 2066 2067 2068 2069 2070Strain fitness (log2 ratio) -1 0 1at 2069.448 kb on - strandat 2069.544 kb on + strandat 2069.804 kb on + strand, within BWI76_RS09850at 2069.872 kb on - strand, within BWI76_RS09850at 2069.985 kb on + strand, within BWI76_RS09850at 2070.054 kb on + strand, within BWI76_RS09850at 2070.075 kb on + strand, within BWI76_RS09850

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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2,069,448 - +0.3
2,069,544 + +0.6
2,069,804 + BWI76_RS09850 0.20 +0.3
2,069,872 - BWI76_RS09850 0.24 +0.4
2,069,985 + BWI76_RS09850 0.30 -0.2
2,070,054 + BWI76_RS09850 0.34 +1.4
2,070,075 + BWI76_RS09850 0.35 +1.0

Or see this region's nucleotide sequence