Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09025

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09020 and BWI76_RS09025 are separated by 70 nucleotidesBWI76_RS09025 and BWI76_RS09030 are separated by 43 nucleotides BWI76_RS09020: BWI76_RS09020 - 6-phospho-beta-glucosidase, at 1,900,097 to 1,901,473 _RS09020 BWI76_RS09025: BWI76_RS09025 - GntR family transcriptional regulator, at 1,901,544 to 1,902,260 _RS09025 BWI76_RS09030: BWI76_RS09030 - transpeptidase, at 1,902,304 to 1,903,218 _RS09030 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1900.696 kb on + strand, within BWI76_RS09020at 1900.717 kb on + strand, within BWI76_RS09020at 1900.762 kb on + strand, within BWI76_RS09020at 1900.762 kb on + strand, within BWI76_RS09020at 1900.784 kb on - strand, within BWI76_RS09020at 1900.784 kb on - strand, within BWI76_RS09020at 1900.858 kb on + strand, within BWI76_RS09020at 1900.953 kb on - strand, within BWI76_RS09020at 1901.409 kb on - strandat 1901.496 kb on - strandat 1901.501 kb on - strandat 1901.700 kb on + strand, within BWI76_RS09025at 1901.735 kb on - strand, within BWI76_RS09025at 1902.048 kb on - strand, within BWI76_RS09025at 1902.391 kb on - strandat 1902.523 kb on + strand, within BWI76_RS09030at 1902.598 kb on + strand, within BWI76_RS09030at 1902.640 kb on + strand, within BWI76_RS09030at 1902.840 kb on + strand, within BWI76_RS09030at 1902.848 kb on - strand, within BWI76_RS09030at 1902.913 kb on + strand, within BWI76_RS09030at 1903.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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1,900,696 + BWI76_RS09020 0.44 -0.5
1,900,717 + BWI76_RS09020 0.45 -1.5
1,900,762 + BWI76_RS09020 0.48 +0.4
1,900,762 + BWI76_RS09020 0.48 -0.2
1,900,784 - BWI76_RS09020 0.50 -0.7
1,900,784 - BWI76_RS09020 0.50 -0.2
1,900,858 + BWI76_RS09020 0.55 -0.2
1,900,953 - BWI76_RS09020 0.62 -0.7
1,901,409 - -0.7
1,901,496 - -0.5
1,901,501 - -0.6
1,901,700 + BWI76_RS09025 0.22 +0.9
1,901,735 - BWI76_RS09025 0.27 +1.8
1,902,048 - BWI76_RS09025 0.70 -0.4
1,902,391 - -2.7
1,902,523 + BWI76_RS09030 0.24 -2.5
1,902,598 + BWI76_RS09030 0.32 -1.5
1,902,640 + BWI76_RS09030 0.37 -1.5
1,902,840 + BWI76_RS09030 0.59 -1.9
1,902,848 - BWI76_RS09030 0.59 -2.3
1,902,913 + BWI76_RS09030 0.67 -1.2
1,903,201 + -4.1

Or see this region's nucleotide sequence