Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05935

Experiment: Sisomicin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05930 and BWI76_RS05935 overlap by 11 nucleotidesBWI76_RS05935 and BWI76_RS05940 overlap by 32 nucleotidesBWI76_RS05940 and BWI76_RS05945 are separated by 27 nucleotides BWI76_RS05930: BWI76_RS05930 - hypothetical protein, at 1,245,509 to 1,248,034 _RS05930 BWI76_RS05935: BWI76_RS05935 - hypothetical protein, at 1,248,024 to 1,249,667 _RS05935 BWI76_RS05940: BWI76_RS05940 - hypothetical protein, at 1,249,636 to 1,250,340 _RS05940 BWI76_RS05945: BWI76_RS05945 - amino acid ABC transporter permease, at 1,250,368 to 1,251,051 _RS05945 Position (kb) 1248 1249 1250Strain fitness (log2 ratio) -2 -1 0 1at 1247.047 kb on + strand, within BWI76_RS05930at 1247.055 kb on - strand, within BWI76_RS05930at 1247.227 kb on + strand, within BWI76_RS05930at 1247.365 kb on + strand, within BWI76_RS05930at 1247.373 kb on - strand, within BWI76_RS05930at 1247.382 kb on - strand, within BWI76_RS05930at 1247.424 kb on - strand, within BWI76_RS05930at 1247.441 kb on + strand, within BWI76_RS05930at 1247.558 kb on - strand, within BWI76_RS05930at 1247.565 kb on + strand, within BWI76_RS05930at 1247.797 kb on - strandat 1247.971 kb on + strandat 1248.190 kb on + strand, within BWI76_RS05935at 1248.288 kb on + strand, within BWI76_RS05935at 1248.290 kb on + strand, within BWI76_RS05935at 1248.303 kb on - strand, within BWI76_RS05935at 1248.314 kb on + strand, within BWI76_RS05935at 1248.366 kb on + strand, within BWI76_RS05935at 1248.631 kb on - strand, within BWI76_RS05935at 1248.749 kb on - strand, within BWI76_RS05935at 1248.831 kb on + strand, within BWI76_RS05935at 1248.917 kb on - strand, within BWI76_RS05935at 1248.957 kb on + strand, within BWI76_RS05935at 1248.957 kb on + strand, within BWI76_RS05935at 1248.957 kb on + strand, within BWI76_RS05935at 1248.962 kb on + strand, within BWI76_RS05935at 1248.965 kb on - strand, within BWI76_RS05935at 1249.193 kb on + strand, within BWI76_RS05935at 1249.212 kb on + strand, within BWI76_RS05935at 1249.372 kb on + strand, within BWI76_RS05935at 1249.415 kb on + strand, within BWI76_RS05935at 1249.415 kb on + strand, within BWI76_RS05935at 1249.449 kb on + strand, within BWI76_RS05935at 1249.476 kb on + strand, within BWI76_RS05935at 1249.481 kb on + strand, within BWI76_RS05935at 1249.481 kb on + strand, within BWI76_RS05935at 1249.621 kb on - strandat 1249.717 kb on + strand, within BWI76_RS05940at 1249.913 kb on + strand, within BWI76_RS05940at 1249.921 kb on - strand, within BWI76_RS05940at 1249.929 kb on - strand, within BWI76_RS05940at 1250.122 kb on + strand, within BWI76_RS05940at 1250.176 kb on - strand, within BWI76_RS05940at 1250.291 kb on - strandat 1250.293 kb on - strandat 1250.317 kb on + strandat 1250.427 kb on - strandat 1250.465 kb on + strand, within BWI76_RS05945at 1250.465 kb on + strand, within BWI76_RS05945at 1250.473 kb on - strand, within BWI76_RS05945at 1250.554 kb on - strand, within BWI76_RS05945at 1250.596 kb on - strand, within BWI76_RS05945

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Per-strain Table

Position Strand Gene LocusTag Fraction Sisomicin 0.008 mg/ml
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1,247,047 + BWI76_RS05930 0.61 -1.1
1,247,055 - BWI76_RS05930 0.61 -1.0
1,247,227 + BWI76_RS05930 0.68 -0.4
1,247,365 + BWI76_RS05930 0.73 +1.1
1,247,373 - BWI76_RS05930 0.74 -0.5
1,247,382 - BWI76_RS05930 0.74 -1.0
1,247,424 - BWI76_RS05930 0.76 -0.5
1,247,441 + BWI76_RS05930 0.76 -0.4
1,247,558 - BWI76_RS05930 0.81 -0.3
1,247,565 + BWI76_RS05930 0.81 -0.9
1,247,797 - +0.4
1,247,971 + -0.4
1,248,190 + BWI76_RS05935 0.10 -2.0
1,248,288 + BWI76_RS05935 0.16 +0.4
1,248,290 + BWI76_RS05935 0.16 -0.1
1,248,303 - BWI76_RS05935 0.17 -0.4
1,248,314 + BWI76_RS05935 0.18 -0.5
1,248,366 + BWI76_RS05935 0.21 +0.5
1,248,631 - BWI76_RS05935 0.37 +0.6
1,248,749 - BWI76_RS05935 0.44 -0.3
1,248,831 + BWI76_RS05935 0.49 -0.4
1,248,917 - BWI76_RS05935 0.54 -0.2
1,248,957 + BWI76_RS05935 0.57 -1.5
1,248,957 + BWI76_RS05935 0.57 -1.3
1,248,957 + BWI76_RS05935 0.57 -1.6
1,248,962 + BWI76_RS05935 0.57 -0.3
1,248,965 - BWI76_RS05935 0.57 -0.3
1,249,193 + BWI76_RS05935 0.71 -0.2
1,249,212 + BWI76_RS05935 0.72 -0.0
1,249,372 + BWI76_RS05935 0.82 -1.0
1,249,415 + BWI76_RS05935 0.85 -1.7
1,249,415 + BWI76_RS05935 0.85 -1.5
1,249,449 + BWI76_RS05935 0.87 -0.6
1,249,476 + BWI76_RS05935 0.88 -1.4
1,249,481 + BWI76_RS05935 0.89 -0.2
1,249,481 + BWI76_RS05935 0.89 -0.6
1,249,621 - -0.9
1,249,717 + BWI76_RS05940 0.11 -1.1
1,249,913 + BWI76_RS05940 0.39 -0.0
1,249,921 - BWI76_RS05940 0.40 -2.2
1,249,929 - BWI76_RS05940 0.42 +0.3
1,250,122 + BWI76_RS05940 0.69 -2.4
1,250,176 - BWI76_RS05940 0.77 -0.5
1,250,291 - -0.1
1,250,293 - -1.6
1,250,317 + +0.5
1,250,427 - -0.7
1,250,465 + BWI76_RS05945 0.14 +0.1
1,250,465 + BWI76_RS05945 0.14 -1.4
1,250,473 - BWI76_RS05945 0.15 +0.9
1,250,554 - BWI76_RS05945 0.27 +0.1
1,250,596 - BWI76_RS05945 0.33 -0.2

Or see this region's nucleotide sequence